Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq47 98.7 1e-15 seq285 96.9 4e-15 seq371 82.4 9e-11 >seq47 Length=109138 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 126225 CCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTC 126284 ||||||||| ||||| || |||| |||||| | | | ||||||| ||| || || Sbjct 39322 CCGCGTGCCGAACTGGCCAATCGGCGCCAACAGCGGGAGATTGTTGCTAAACACGAAATC 39381 Query 126285 CTGCGCAAACTTGACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTG 126344 |||||| | |||||||||||| | || |||||||||||| | |||| |||| || Sbjct 39382 CTGCGCCATGTTGACAATGGTCGAGTTGAGCGACTGCTCGCCGTGGTGGTAGCCGGTATG 39441 Query 126345 CTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGATAAACTCGGTCGAGTTG 126396 || || ||||| ||| ||| || || |||||||| || |||| |||| Sbjct 39442 TTCAGCGACGTAACCGGCCAGTTGGGCGACCTTGATCTCCTGGGTCAGGTTG 39493 >seq285 Length=65808 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 15086 CAAAAGGGCACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGC 15145 || ||||| || ||||| |||| | || |||||| |||||||| || ||| |||| Sbjct 32979 CAGAAGGGTACCTGCGGTATGACGTACCGCCAGGAGGACATGCCGTTCACCATCGAAGGC 32920 Query 15146 ATGACGCCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 || ||||||||| | ||||||||||| || ||||||||| ||||||||||| Sbjct 32919 ATCACGCCCGACCTGATCATCAACCCGCACGCCATCCCGTCGCGCATGACCAT 32867 >seq371 Length=48181 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 137937 CACGTGAATGTTCATCTCGTCGCCGTCAAAGTCGCAGTTGAAGGGCTTCGTTATGGCCAG 137996 |||||| | |||||| ||||||||||| |||||| |||| | ||| ||| | ||| Sbjct 42595 CACGTGCAGGTTCATTTCGTCGCCGTCGAAGTCGGCGTTGTACGGCGACGTGCACGACAG 42536 Query 137997 GTTGATTTTGAGCGTCTTGACTGGTTTGATGACCACCTTAAAGGCCATCATGGACGCCTT 138056 ||||| || || | | || |||| ||||| || ||||| ||| ||| Sbjct 42535 GTTGAGGCGGAACGACGAGTGAGGCATGATCTTGGCCTTATGGGACATCAGAGACATCTT 42476 Query 138057 GTGCAGCGTCGGTTGCCGGTTGAGCAGCACGTAGTCGCCGTCC 138099 ||||| | ||| || ||||||| ||| ||||||||||||||| Sbjct 42475 ATGCAGTGACGGCTGGCGGTTGAACAGAACGTAGTCGCCGTCC 42433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611386543326400