Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq30 87.8 2e-12 >seq30 Length=128594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/277 (68%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 130120 ATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCT 130176 ||||||||||||||||| || | || | || | ||||||||| || | || || Sbjct 3734 ATGTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGCCTCCACCC 3793 Query 130177 TGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCC 130236 ||||| |||| |||| | | |||||| | || |||| ||| | ||| ||||| | Sbjct 3794 TGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGACCAGGCCGTTCGAG 3853 Query 130237 GTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCT 130296 |||||||| |||| ||| | ||| || || |||| ||||| || || Sbjct 3854 GTGCCGTTGGTGCCGCGGATGTAGGAGCCGGTGGCGCGGACGTCGTGAACCGCGAGGCCA 3913 Query 130297 ATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGT--AGCGTTTCATAAATGCCAA 130354 ||||||||| | || || |||| |||||| || | ||||| || || ||||| Sbjct 3914 ATGCCGCCGGCCTGCTTCGAGATCATCGCGCA--CGTCTTAAGCGTGTCGTAGATGCCCT 3971 Query 130355 CGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 |||| ||| || || ||| | | |||||| ||||| Sbjct 3972 CGATCGAGTCCTCCTTCATGGTGACGAGGAAGCACGA 4008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724347579410