Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq311 102 2e-16 seq53 102 2e-16 >seq311 Length=46126 Score = 102 bits (112), Expect = 2e-16 Identities = 253/380 (67%), Gaps = 12/380 (3%) Strand=Plus/Minus Query 218584 GTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTG 218643 || || ||||||||||| ||||| ||| | ||||| || |||||||| ||||| Sbjct 40205 GTCGACGGCCTCAAGCCCGGTCAGCGCAAGGTGCTCTTCGCGTGCTTCAAGCGCAACCTC 40146 Query 218644 GTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCAT 218703 ||| | || || |||||||| ||| | || || || |||| | || | |||||| Sbjct 40145 GTTAACGAGATCAAGGTCGCGCAGCTCAGCGGCTACGTTGCCGAGAACTCGGCCTACCAC 40086 Query 218704 CACGGTGAGCAGAGTCT-GC---AGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGG 218759 ||||| || ||||| || || |||| || | |||| ||| |||| || || Sbjct 40085 CACGGCGA----AGTCTCGCTCTCCGGCACCATCGTGAACCTGGCGCAGAACTACGTCGG 40030 Query 218760 CAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGG 218819 | |||||||| ||||| ||| || | ||||||||| ||| | || ||| || Sbjct 40029 CTCGAACAACATCAACTTTCTGTGGCCGAGCGGTCAGTTCGGTACGCGCGCGCAGGGCGG 39970 Query 218820 AAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGT 218879 || || || | | || ||||| || | | || ||| | |||||| ||| Sbjct 39969 CCGCGACTCCGCGTCGCCGCGTTACATCTTCACTTATCTCTCCCCCATTACGCGCACGGT 39910 Query 218880 GTTCAATCAGGC--CGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATT 218937 ||| || | | ||| || | | |||| || || || | ||||| || ||||| Sbjct 39909 CTTC--TCGGCCAGCGACGACGCGATCCTGAACTACCTCAACGACGACGGGCAGTCGATC 39852 Query 218938 GAGCCCGAGTGGTATGTGCC 218957 |||||||||||||||||||| Sbjct 39851 GAGCCCGAGTGGTATGTGCC 39832 >seq53 Length=108086 Score = 102 bits (112), Expect = 2e-16 Identities = 230/345 (67%), Gaps = 3/345 (1%) Strand=Plus/Minus Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCG 251856 |||||||||| || ||| | ||||| || || | | || | ||| || |||||| Sbjct 13012 GACAGCTTGTGCTGGAGCATGGAGTAGAGCAGGCAGGCGAAGTCGGTGTGGAGGCCCTCG 12953 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||||| ||||| ||||||||| | || || |||||| || || ||| ||||| Sbjct 12952 TCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCTTGCCGCGCTTCTTGAGC 12893 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 |||||||| ||||| ||||| || ||||| | | |||||||| || | | | || Sbjct 12892 CAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGCCGACG 12833 Query 251977 AGGCGCTCAGCAAACGAC---TTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTC 252033 |||||||| || |||||| || | | |||| | ||||| || ||||| Sbjct 12832 AGGCGCTCGGCGAACGACGCAGTGGGGTTGTTGATCCACTTGAGGGCCCAGGCCGCCTTG 12773 Query 252034 TTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCC 252093 | | |||| || | || ||||| || | ||||||| | || |||| | | ||| Sbjct 12772 GTGCGGACCGAAGGCACGGTCTCGATGGCGTTAAAGAGACGGGTCTTCTCGACCTGGTCG 12713 Query 252094 TCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||| | || | |||||| ||||| |||| | |||||| Sbjct 12712 GTGATGTAGGTGTCGATCAGGAGCGAGTAGGTCTCGGCGTGGATG 12668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827397220474