Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 210 4e-49 seq3 132 9e-26 seq311 131 3e-25 seq53 118 2e-21 seq30 107 4e-18 seq182 105 1e-17 >seq1 Length=207624 Score = 210 bits (232), Expect = 4e-49 Identities = 477/707 (67%), Gaps = 13/707 (2%) Strand=Plus/Plus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 |||||| | || || ||||| ||||| |||||||| |||||||| ||||| | ||| || Sbjct 87946 CCACATGCCCTCAACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGGCGTCGAGGTTGCC 88005 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGA--GTGATTTTT 268375 ||| | ||||| | |||| | | | | | ||| | | || || | || | || Sbjct 88006 CAGGTAGAGGCACTCCTGCATCTTGTGGTGGATGCGGG--ACACGGCCATCGTCGTCTTG 88063 Query 268376 CGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC 268435 ||||||||||| ||| ||| || | || |||||||||||| ||||||||||| | Sbjct 88064 CGGGTCACGAAGGTCGGGCCGCGGCGGGGCGACTCGTGGTTGAACAGGATGCCGTTCGAG 88123 Query 268436 GCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCA 268495 ||| ||||| || ||||| |||||||| || || ||||| | || || ||| || Sbjct 88124 GCGTGGATGCCGTACGCCTCGCGGTAGTTGACCACGATCCAGAACGCGTACTGCTTGGCG 88183 Query 268496 ACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACT 268555 || ||||| || || || || | ||| || ||||| | || || | || ||||| Sbjct 88184 ACGGCGTAGGGGGAGCGCGGGTAGAACGGGGTCGTCTCGGTCTGGGGCGTCTCGCGGACC 88243 Query 268556 TTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAG 268615 ||||| ||||||| |||||||| |||||||| || || || || |||||| Sbjct 88244 TTGCCGTAGAGCTCAGAGGTCGAGGCTTGGTAAAAGCGGACAGTGTTGGTCAGGCCGCAG 88303 Query 268616 ATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCC 268675 | || | || ||||||| || || || || | | | || || || || || ||||| Sbjct 88304 GTGCGAAGCGCGTCGAGCAGGCGCAGCGTGCCGACGGCGTCGACCTCAGCCGTGTACTCG 88363 Query 268676 GGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGT 268735 || ||||||| ||||| ||| || || || || ||||| || || || || || Sbjct 88364 GGGGTCTCGAACGACACGGCGACGTGAGATTGCGCACCGAGGTTGTAGACTTCGTCGGGG 88423 Query 268736 TTGACC-TGCTGCACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCAA 268794 ||| ||| ||| ||| || ||| || | |||||||||||| |||||||||| Sbjct 88424 CGCACCTTGCCGCA-GATAGCGACCAGGCACGAGGTGTCGGTGAGGTCGCCGTAGTGCAG 88482 Query 268795 CACAAGCTGC---CCTGACTCGGAGTACTTGTCGTACA-GTGCATCAATTCGCTGGGTAT 268850 | ||| || || | |||| | | | ||| | |||| || || || || | Sbjct 88483 GAAAAGACGCACACCAGTCTCGTGGCGGTCGCGGTAGATGTGC-TCGATGCGGCCCGTGT 88541 Query 268851 T-CAGTTGCGAAGAGCGCCGTTTGATTCCATGAACGACGTACCCAATGTTGATGAGGAAT 268909 | || || ||||| || |||| || || || |||| || | | || ||||| Sbjct 88542 TGAAGGAGC-TGGAGCGGCGGATGATGCCGTGCACCTCGTAGCCCTTTTCGAGCAGGAAC 88600 Query 268910 TCTGCAAGGTAAGAGCCATCTTGCCCCGTGATTCCCGTAACAAGGGC 268956 || || ||||| ||||| || || ||||| || || || | ||| || Sbjct 88601 TCGGCCAGGTATGAGCCGTCCTGGCCCGTAATACCGGTGATAAGCGC 88647 >seq3 Length=187283 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| ||||| | || | ||| | ||| |||||||||||||| |||| ||| || |||| Sbjct 12532 TCCACCGCGCAAACGAAGTACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGC 12473 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || || || | |||||| || ||| ||||| | || ||||| || || Sbjct 12472 AAGGGTGCGGCCGTCGTCGAGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGGTCCGGGGG 12413 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||| |||||||| || ||||| |||||||| |||||| ||||| | || || Sbjct 12412 AATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATCGTGTCGGAATGGTCGAC 12353 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || | ||||||||||||||| |||||||| Sbjct 12352 ATCAAGCGTAATAGTCTTGTTAGCGAGGGTCTTGACGAAAATCTGCAT 12305 >seq311 Length=46126 Score = 131 bits (144), Expect = 3e-25 Identities = 273/400 (68%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 176135 GGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACG 176194 ||| ||||| | || || || ||| | ||||| || | |||||||||||| | || Sbjct 39831 GGGCACATACCACTCGGGCTCGATCGACTGCCCGTCGTCGTTGAGGTAGTTCAGGAT-CG 39889 Query 176195 C-TCGTCGGCCTTGTGGAAAATATCCCGGGTGT--TGGGGGACAGTTGTGTGAAGATATA 176251 | |||||| || | || || | | | | || ||||||| || | |||||||| || Sbjct 39890 CGTCGTCG--CTGGCCGAGAAGACCGTGCGCGTAATGGGGGAGAGATAAGTGAAGATGTA 39947 Query 176252 CCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAG 176311 | | ||||| ||| ||| || || ||| | |||||| || |||| || Sbjct 39948 ACGCGGCGACGCGGAGTCGCGGCCGCCCTGCGCGCGCGTACCGAACTGACCGCTCGGCCA 40007 Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCA--TTCCGACTATGGCGCCC 176369 || || |||||||| ||||| || ||||||| || |||| ||| || |||| ||| Sbjct 40008 CAGAAAGTTGATGTTGTTCGAGCCGACGTAGTTCTGCGCCAGGTTC--ACGATGGTGCCG 40065 Query 176370 TGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGC 176429 ||| || | ||||||||||| ||| | | |||||| ||| ||| | |||| Sbjct 40066 GAGAGCGAGACTTCGCCGTGGTGGTAGGCCGAGTTCTCGGCAACGTAGCCGCTGAGCTGC 40125 Query 176430 GCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGC 176489 ||||| ||||| || | |||||||||||||| || || ||| || | ||| ||||| Sbjct 40126 GCGACCTTGATCTCGTTAACGAGGTTGCGCTTGAAGCACGCGAAGAGCACCTTGCGCTGA 40185 Query 176490 GAGGGCTTCAGACCATCGACGACCGACGGAATGGAACGCT 176529 |||||| || || ||||||| || || || | |||| Sbjct 40186 CCGGGCTTGAGGCCGTCGACGAGGGATGGGATCGCGCGCT 40225 >seq53 Length=108086 Score = 118 bits (130), Expect = 2e-21 Identities = 148/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 10204 GGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCT 10263 |||||||||||| || |||| | || || || || | || | ||||||||||| Sbjct 13014 GGGACAGCTTGTGCTGGAGCATGGAGTAGAGCAGGCAGGCGAAGTCGGTGTGGAGGCCCT 12955 Query 10264 CGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCA 10323 ||||||| ||||| ||||||||| || || |||||||| || || || | Sbjct 12954 CGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCTTGCCGCGCTTCTTGA 12895 Query 10324 GCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGC 10381 ||||||| ||||||||||| || |||||||| ||||| ||||| ||||| | || | Sbjct 12894 GCCAGAAGATGGCGCAGAAGGAGCCGGAGAA--GAAGATGCCCTCGACGCAGGCGAAGCC 12837 Query 10382 GACGAGGCGCTCTGCGAAGGA 10402 |||||||||||| ||||| || Sbjct 12836 GACGAGGCGCTCGGCGAACGA 12816 >seq30 Length=128594 Score = 107 bits (118), Expect = 4e-18 Identities = 584/917 (64%), Gaps = 39/917 (4%) Strand=Plus/Plus Query 31401 TCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTC 31460 ||||| || ||| || ||| || ||||| || || ||||||| || ||||| || | Sbjct 3020 TCGCACGACGCCGTCAGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGCGGTTCAGCGCC 3079 Query 31461 TTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAGACCCTGG 31520 | ||| | || || || | |||| |||| || || | |||| || |||||| Sbjct 3080 TGCGCCTCCTCGGACTCGTACGGCAGCCGCATAAGGATGAGCGCGTCGGCCAGGCCCTGG 3139 Query 31521 ACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAG 31580 ||||| | || || ||||| |||||||||| || || |||||| | | ||| Sbjct 3140 ACACCGAGCCCGATGGGGCGGTGGCGCATGTTGCTCGTGCGCGCCTCCTTGACCGGGTAC 3199 Query 31581 GACATGACGTCAATGCTCTTGTCGAGGTT---CTTGGCCAGAATCTTCACGTGCTTGCGA 31637 ||| ||| ||| || |||||| | |||| | | |||| | | | Sbjct 3200 AGGTTGATGTCGATGACGCGGTTGAGGTTGCGCGTGGCGACTTGCGTCACCT-CAAAC-- 3256 Query 31638 AGGTCCTCAAAGTCGTAGGCACC-----GTTCTT-GACGTAGTTCTGGAGGACGATGCTT 31691 ||| || |||||||||| || |||| | |||| || | ||| |||| Sbjct 3257 AGGCGCTGGAAGTCGTAGGTGCCCGTGCGTTCGTCGACGAAGCGGTTGAGCGCGATCGAG 3316 Query 31692 CCAATGACACACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGA 31751 | | | ||||| ||| ||||| | || ||||| ||||| ||||| | || || Sbjct 3317 GCGAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACTCGACGATCTCCGTGCACAGG 3376 Query 31752 TTGCTGCCCGTGATGGTGCCGGCATTGGACTGCATGTTC---TTCACGTT-CACGCTGTC 31807 || || ||| ||||| || |||| |||| || ||| ||||| ||| Sbjct 3377 TTCGAGCAGCGGATCGTGCCCAGGTT---CTGCTGGTTCGACTTGCGGTTGCACGC-GTC 3432 Query 31808 CTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGAC 31867 ||||| ||| | ||| ||| |||||||||| ||||| || || || |||| | Sbjct 3433 CTTGTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCACGGCCGTCCACAG 3492 Query 31868 ATCGCGCGCTTTGA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGT 31926 ||||||| |||| || || | ||| || |||| | |||||| | ||||| Sbjct 3493 CGCGCGCGCCTTGATCGTCTGCCG-CGCGCGGCCCTGGTTCTCGTACTGCGTGTACAGCC 3551 Query 31927 CCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCG 31986 |||| | || ||| | | |||| || || || ||| | ||| ||||||| Sbjct 3552 GCTCGAAGTCGGCGCCCCACGAGTCGGCCAGCCCCGGCGCCTCGTGCGGGCAAAAGAGCG 3611 Query 31987 ACCATGCGACATCGGCCT---CTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGT 32043 |||| || ||| || | || |||| |||||| |||||| || ||| | ||| Sbjct 3612 ACCA---GAGCTCGTTCTTCTCCACGCGCTCCATGAAGAGGTCGCACACCCAGAGGCCGT 3668 Query 32044 AAAACAGATTCCTGGCGCGTTGGGTCTCCTCA---CCCTGGTTACGTCGGAGCAGCAGGA 32100 | || || | | ||||| | |||||| || ||||| || || ||||| Sbjct 3669 AGAAAAGGTCGCGCGCGCGC---GCCTCCTCGGAGCCGTGGTTCTTGCGCAGGTCCAGGA 3725 Query 32101 AGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCGGCG-- 32158 || ||||||||||| ||| ||||| ||||| |||||||| | ||||||||||| Sbjct 3726 AGGACATGATGTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGC 3785 Query 32159 -ACCCCCCTGGTTTGCGTATGCAGATGTCGTGTCGTACACCTTCAGCATGGGTACGATGC 32217 || ||||||| |||| | || ||| | |||| |||||| || || | || Sbjct 3786 CTCCACCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGACCAGGC 3845 Query 32218 CATCAGACTCGCCATTGGTCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGT 32277 | | || ||| ||||| || |||| | ||| || | |||| | |||| | | Sbjct 3846 CGTTCGAGGTGCCGTTGGTGCCGCGGATGTAGGAGCCGGTGGCGCGGACGTCG-TGAACC 3904 Query 32278 GC-AGGCCGATGCCGCC 32293 || ||||| |||||||| Sbjct 3905 GCGAGGCCAATGCCGCC 3921 >seq182 Length=55624 Score = 105 bits (116), Expect = 1e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || | ||| || | ||||| || | |||||| || ||| ||||| | || ||| Sbjct 55623 TAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTGG 55564 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || ||||| |||||||| || ||||| |||||||| |||||||||||| | Sbjct 55563 TCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATGGTGTCCGAG 55504 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||||| || || ||||||||| ||||| |||||||| Sbjct 55503 TGGTCGACATCAAGAGTGATGGTCTTGTTCGCGAGGGTCTTCACGAAAATCTGCAT 55448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921614174520080