Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq30 502 5e-137 seq53 176 9e-39 >seq30 Length=128594 Score = 502 bits (556), Expect = 5e-137 Identities = 1432/2160 (66%), Gaps = 82/2160 (4%) Strand=Plus/Plus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 |||||| || || |||||||||| || | |||||||||||||| |||||||| | Sbjct 2394 TGAACTTGATGGCGTCGACGGCGGCGCGCGTGCGGAGGTAGTACATGCCCGTCTTGAGGC 2453 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | | ||| |||| | |||||| | |||||||| |||| | ||||| Sbjct 2454 CCTTCTTCCACGCGTAAAAGTGCATCGAGGTCAGCTTGGCGTAGTTGA-CGTTGGG---- 2508 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCG 243919 || || ||||| ||||| |||||||| | | | |||| || || ||| Sbjct 2509 -------CATGTGGACGTTGAACGACTGCGACTGGTCGATGTACG-CGCCGCGGTCGGCG 2560 Query 243920 GCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAG- 243978 |||||| ||||||| ||| ||||| || ||||||||||||| || | | Sbjct 2561 GCCATGTTGATGAGCGTCTTGCCCTTCATCTCCCACACCGTCTTGTAGAT---CTCGCGC 2617 Query 243979 --GTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 || |||||||| | | | |||||| ||||| |||| | ||||||||| | | Sbjct 2618 AAGTCCTCGGGGATCTCGGTCAGCCCCTGCACAGAGCCGTTGTTGGCGATGAGCTTGTTC 2677 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCG-ACCAGGTGCCTGTTCAC 244095 | | | ||||||||| ||| ||| || | | || | ||||||| ||| || Sbjct 2678 TTGAGCGTCTGGTTCCACAGTCCCTGGCGGATGAG-GTCGCGCAGCAGGTGCGAGTTGAC 2736 Query 244096 -CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 ||| ||| ||| || | |||| ||| ||| ||||||||| || | ||||| Sbjct 2737 GCACACGAA-CTCGCCGGCCAGCGTGCGCCGCACGTAGAGGTTCGACGTGTAGGCCTCGA 2795 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 ||| |||||||||| ||||||| |||||| || || |||||||||| ||| || | Sbjct 2796 ACGACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGGGCATGGGCGCCACAAGAA 2855 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274 | ||| | || ||| | || |||||| ||||| || ||||||||| || Sbjct 2856 GCGAGTTGCGCAGCCCGACGCGCTTGATGCGCTCCTTGAGCGCGGCCCAGTCCCAGC-GC 2914 Query 244275 CCGAG-AGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCA-GCCCCTTGCTGAC 244332 ||| | | || | | | |||||||||||| ||||||||| ||| | | | | Sbjct 2915 CCGCCCACCGTCGCGGGCTCCACGCCCCACATGTCGAACTGCAGCTCGCCGCGCGAGGCC 2974 Query 244333 GGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC-GT 244391 || | |||| | ||| | ||| | |||||||||| ||||| | || | | || Sbjct 2975 GGCGA-GCCCGGGAAGGACTCGTACGCGCCGTCGCGCTCGGCCATGTCGCACGACGCCGT 3033 Query 244392 CGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGC 244451 | || |||||| ||||||||||| | ||||| ||||| | | |||| || Sbjct 3034 C-AGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGCGGTTCAGCGCCTGCGCCTCCTCGG 3092 Query 244452 AGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGA 244511 | | | || | | ||| | |||| |||||||||| ||||| || |||| |||| Sbjct 3093 ACTCGTACGGCAGCCGCATAAGGATGAGCGCGTCGGCCAGGCCCTGGACACCGAGCCCGA 3152 Query 244512 TGGGTCTGTGTCGCTTGTTG---GAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 |||| | ||| ||| ||||| | |||| || || || ||||| | |||| || Sbjct 3153 TGGGGCGGTGGCGCATGTTGCTCGTGCGC---GCCTCCTTGACCGGGTACAGGTTGATGT 3209 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCTGAAA 244626 |||| || |||||||||||| ||| | |||| || || ||| |||| || Sbjct 3210 CGATGACGCGGTTGAGGTTGCGCGTGGCGACTTGCGTC--ACCTCAAACAGGCGCTGGAA 3267 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 |||||| || || ||| | || || || |||||| |||| Sbjct 3268 GTCGTA-------GGTGCCCGTGCGTTCGTCG-----ACGAAGCGGTTGAGCGCGATCGA 3315 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||| |||||||| ||||||||||| || | ||||||| ||| ||||| ||||| || Sbjct 3316 GGCGAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACTCGACGATCTCCGTGCACAG 3375 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| ||| ||| |||||||||| ||| || || |||||| |||||| |||||||| Sbjct 3376 GTTCGAGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCCTT 3435 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 |||||| ||| ||||| || ||||| |||| || |||| ||| |||| || | Sbjct 3436 GTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCACGGCCGTCCACAGCGC 3495 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | ||||||| |||| || || ||||| |||||| | |||||||| ||| Sbjct 3496 GCGCGCCTTGATCGTCTGCCGCGCGCGGCCCTGGTTCTCGTACTGCGTGTACAGCCGCTC 3555 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGC-CGGGCACATGAGACTCC 244985 ||| |||| |||||| ||| | || || || | | || |||||| | ||| || Sbjct 3556 GAAGTCGGCGCCCCACGAGTCGGCCAGCCCCGG-CGCCTCGTGCGGGCAAAAGAGCGACC 3614 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || | || || | || ||||||||||||| | ||||||| | | ||| | Sbjct 3615 AGAGCTCGTTCTTCTCCACGCGCTCCATGAAGAGGTCGCACACCCAGAGGCCGTAGAAAA 3674 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | | | | ||| || ||||| |||||| | ||| |||| ||| | || Sbjct 3675 GGTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGTTCTTGCGCAGGTCCAGGAAGGACATGA 3734 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCG----GGCCGCTTGTTGCCT 245161 |||| ||||||| ||||||| |||||| |||| ||||| ||| || | || Sbjct 3735 TGTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGCCT----CCA 3790 Query 245162 CCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||||||| || | | | |||||| | |||||| | || || | |||||| Sbjct 3791 CCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGACCAGGCCGTTC 3850 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATG 245281 ||| |||||||||||| |||||||| ||| || | | || || | | | | | Sbjct 3851 GAGGTGCCGTTGGTGCCGCGGATGTAGGAGCCGGTGGCGCGGACGTCGTGAACCGCGAGG 3910 Query 245282 CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCC 245341 || | |||||||| ||||| ||||| | ||||| |||| | ||||| |||||| Sbjct 3911 CCAATGCCGCCGGCCTGCTTCGAGATCATCGCGCACGTCTTAAGCGTGTCGTAGATGCCC 3970 Query 245342 TCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTG 245401 || || |||| ||||||| ||| || ||||| || |||||||| ||| || || Sbjct 3971 TCGATCGAGTCCTCCTTCATGGTGACGAGGAAGCACGACGACAGCTGCGGCATGCACGTG 4030 Query 245402 CACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGAACCCGTA 245460 | | |||||| || |||||| ||||||||| || | | || ||| | || |||| Sbjct 4031 CCGGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCA-CTTCTGCGACATGAGGTCGTA 4089 Query 245461 CGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT-CTGCAGGGCGCACCTCATGAGGG 245519 ||||| || | |||| | | ||||| | |||||| | ||| |||| | |||||| Sbjct 4090 CGTCTCGATCGCAGCGGCCAGGTTGTTGAAGTGGATGCCGCA-GGCGACGCGCATGAGCA 4148 Query 245520 TGTGCTG-GGGCG-TC-TCGATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGA 245576 ||||||| ||||| || |||| | || | | | |||||||| ||| |||||||||| Sbjct 4149 TGTGCTGTGGGCGCTCGACGATCTGGCCGTGGAG---CTTGAGCAGGTACGAGCGCTCGA 4205 Query 245577 GCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGA 245636 |||||||||| || ||||| |||||| |||||| || || || ||| |||| || Sbjct 4206 GCGTCTTGAAGCCGAAGTAGTCGTAGCCGAAGTCGCGGTTGTAGACGATGGCCGCGTTGA 4265 Query 245637 GTCTCTCGGCGTGCTTCTGA-CTGACCTCGTAAAACTTTTGCGCT-ATGAGGGGAGCCCT 245694 | | ||||||| | || ||| || || |||| || | | || || || Sbjct 4266 GCGTGTCGGCGT-TGGCAGAGATGAAGGCG-AACACTTCGTCGTTGAGCAGCGGCGCAGG 4323 Query 245695 GAGCCCGGTGTCCGGATTGACGTTGAACCAGAGC--CTCTTGCA-CACCTCCGAGAACTT 245751 |||||||| | || | |||| || || || || || || || | ||| || Sbjct 4324 CAGCCCGGTCTTGGGCTCAACGT---ACGAGTGCAGGTCCGTCATGACGTCGGCGAAGTT 4380 Query 245752 GGGGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCCGCCAACTTGCTGTAGTC 245811 ||||| ||| |||||||||| || || ||||| || |||| | |||||| Sbjct 4381 CTTCTTGGTGTTCTTGTGCAGGTTGGATACGGCGATGCGGGCGGCCAGGATCGCGTAGTC 4440 Query 245812 GGGGTGAGTGGTGGTCATGTTGGAGGCCGTGTGGGCCAGCAGCTCGTCAATCTCGGACGT 245871 |||||| || | | || ||| | || || | ||| |||||||||| |||||||| Sbjct 4441 GGGGTGCGTCGAAGACAGGTTCGCCGCGGTCTCAGCCGCGAGCTCGTCAAGTTCGGACGT 4500 >seq53 Length=108086 Score = 176 bits (194), Expect = 9e-39 Identities = 238/332 (72%), Gaps = 0/332 (0%) Strand=Plus/Plus Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 || |||||| | ||| | ||| ||| | ||| || |||| |||||| || | Sbjct 12660 ATGGAGAACATCCACGCCGAGACCTACTCGCTCCTGATCGACACCTACATCACCGACCAG 12719 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 |||||| | | | || || || ||||| ||||| |||| | || | |||||| Sbjct 12720 GTCGAGAAGACCCGTCTCTTTAACGCCATCGAGACCGTGCCTTCGGTCCGCACCAAGGCG 12779 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCC 42713 | |||||| ||||| |||||| | | ||| || |||||| |||| | || || | | Sbjct 12780 GCCTGGGCCCTCAAGTGGATCAACAACCCCACTGCGTCGTTCGCCGAGCGCCTCGTCGGC 12839 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 || || ||||||||||||||||||||| ||| ||||| | ||||||||||||||||| Sbjct 12840 TTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAG 12899 Query 42774 CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || | ||||||||||||||||||||| ||||| |||||| | |||||||| Sbjct 12900 AAGCGCGGCAAGATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGC 12959 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 || || | ||||| |||||||| || | ||| Sbjct 12960 CTCCACACCGACTTCGCCTGCCTGCTCTACTC 12991 Score = 120 bits (132), Expect = 6e-22 Identities = 174/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| ||||| || || ||| |||||||||||| || || |||||| ||| Sbjct 12242 ATCCAGCACAAGACGATTTGGGAGATGTACAAGAAGCATAAGGCGTCTTTCTGGACTGCC 12301 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||| | ||| | | |||| || | || || | ||| || Sbjct 12302 GAGGAGATCGACCTCAGCGCCGACCCCAAGGACTGGAAGACCCTCTCGGCCGGCGACCAG 12361 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| ||| | || ||||||||||||||||| |||||||| || ||||||| Sbjct 12362 CACTTCATCAAGAACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATTGTGCTTGAGAAC 12421 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524 || || | | |||||||| ||||| ||| | ||||| |||||||||||||||||| Sbjct 12422 CTCGCTGTCCGCTTCATGAAGGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTC 12481 Query 42525 CAGATA 42530 ||| || Sbjct 12482 CAGGTA 12487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944330771772640