Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq311 102 2e-16 seq3 102 2e-16 >seq311 Length=46126 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 325349 CCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTT 325408 || |||||| | || ||||||||| || |||| ||| |||||||||| || Sbjct 39970 CCGCCCTGCGCGCGCGTACCGAACTGACCGCTCGGCCACAGAAAGTTGATGTTGTTCGAG 40029 Query 325409 CCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGA 325468 ||||| || | ||| || |||||||||||||| || || || ||||||| ||||| Sbjct 40030 CCGACGTAGTTCTGCGCCAGGTTCACGATGGTGCCGGAGAGCGAGACTTCGCCGTGGTGG 40089 Query 325469 TAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAA 325528 ||||| | ||| |||||||| ||||||| ||| || ||||| | ||| | | Sbjct 40090 TAGGCCGAGTTCTCGGCAACGTAGCCGCTGAGCTGCGCGACCTTGATCTCGTTAACGAGG 40149 Query 325529 TTGCGCTTGAA 325539 ||||||||||| Sbjct 40150 TTGCGCTTGAA 40160 >seq3 Length=187283 Score = 102 bits (112), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||||||||| | | ||||||||| |||| |||| ||||| |||| || |||||| Sbjct 12534 TGTCCACCGCGCAAACGAAGTACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCG 12475 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || ||||| ||||| || | || || || |||||| || ||||| || || Sbjct 12474 GCAAGGGTGCGGCCGTCGTCGAGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGG---TCC 12418 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || |||||||| ||| || ||| | || || | ||| Sbjct 12417 GGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATCGTGTCGGAATGG 12358 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || ||||| | || ||||||||||| |||||||| Sbjct 12357 TCGACATCAAGCGTAATAGTCTTGTTAGCGAGGGTCTTGACGAAAATCTGCAT 12305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179643608374092