Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq30 230 3e-55 seq53 113 5e-20 seq311 100 3e-16 >seq30 Length=128594 Score = 230 bits (254), Expect = 3e-55 Identities = 1075/1683 (64%), Gaps = 38/1683 (2%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 |||||||||||||| ||||||||||| |||| |||||| || || | |||||||||| | Sbjct 2426 CGGAGGTAGTACATGCCCGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGCATCGAGGTC 2485 Query 113657 AACTTGGAGAGTGTTGGACTTTC--CATGAAGAGGTTCATACTTTGGGATTGATCGATGA 113714 | ||||| | |||| || || |||| || ||| | || || || |||||| Sbjct 2486 AGCTTGGCGTA-GTTG-ACGTTGGGCATGTGGACGTTGAACGACTGCGACTGGTCGATGT 2543 Query 113715 A-GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTT 113773 | ||| || || || || ||||| | || | ||| ||| || |||||||| || Sbjct 2544 ACGCG-CCGCGGTCGGCGGCCATGTTGATGAGCGTCTTGCCCTTCATCTCCCACACCGTC 2602 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||||| | | || || ||||| || | || | ||||| Sbjct 2603 TTGTAGATCTCGCGCAAGTCCTCGGGGATCTCGGTCAGCCCCTGCACAGAGCCGTTG--- 2659 Query 113834 TTGACCATGAGATCCTTCAT-ATCCTTTGA--CCAGAGACCAATCTTTTTGAGATCCTCC 113890 ||| | ||||| | ||| | | | | || ||| || || |||| || | Sbjct 2660 TTGGCGATGAGCTTGTTCTTGAGCGTCTGGTTCCACAGTCCCTGGCGGATGAGGTCGCGC 2719 Query 113891 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 | || ||| ||||| || ||||| || || || ||||| | || |||| || Sbjct 2720 AGCAGGTGCGAGTTGACGCACACGAACTCGCCGGCCAGCGTGCGCCGCACGTAGAGGTTC 2779 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | |||||| | ||| || |||| ||||| |||| ||| || | ||| ||| |||||| Sbjct 2780 GACGTGTAGGCCTCGAACGACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGGGC 2839 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 ||||| |||| ||||| ||| || || || | | ||||| |||||||| ||| Sbjct 2840 ATGGGCGCCACAAGAAGCGAGTTGCGCAGCCCGACGCGCTTGATGCGCTCCTTGAGCGCG 2899 Query 114071 TCCCAGTCGTAGTTG------AGCTTTGT---CTCCCCCTGCCACATATCAAACTGGAGG 114121 ||||||| || | | | | |||| | |||||| || ||||| || Sbjct 2900 GCCCAGTCCCAGCGCCCGCCCACCGTCGCGGGCTCCACGCCCCACATGTCGAACTGCAGC 2959 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 || | ||||| ||||| ||| || | |||||| | ||| || ||| |||| Sbjct 2960 TCGCCGCGCGAGGCCGGCGAGCCCGGGAAGGACTCGTACGCGCCGTCGCGCTCGGCCATG 3019 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATG-CGAGCATTCATTGC 114240 ||| | |||| || || ||| || || ||| |||| ||| || | |||| || Sbjct 3020 TCGCACGACGCCGTCAGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGCGG-TTCAGCGC 3078 Query 114241 CTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTT 114299 || ||||| ||||| || ||| || || || || || | | || || || || | Sbjct 3079 CTGCGCCTCCTCGGACTCGTACGGCAGCCG-CATAAGGATGAGCGCGTCGGCCAGGCCCT 3137 Query 114300 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 114359 |||||||||| || || ||||| || | ||| || | | || || || || || | Sbjct 3138 GGACACCGAGCCCGATGGGGCGGTGGCGCATGTTGCTCGTGCGCGCCTCCTTGACCGGGT 3197 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 114419 | | || | ||||| || | || || || ||| | || | || | ||| | Sbjct 3198 ACAGGTTGATGTCGATGACGCGGTTGAGGTTGCGCGTGGCGACTTGCGTCACCTCAAACA 3257 Query 114420 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 114479 | | | | || | ||| || ||| | ||| | || ||||| || | Sbjct 3258 GGCGCTGGAAGTCGTAGGTGCCCGTGCGTTCGTCGACGAAGCGGTTGAGCGCGATCGAGG 3317 Query 114480 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 114539 | || || ||||| | ||| || |||||||| | || ||||| |||| | Sbjct 3318 CGAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACTCGACGATCTCCGTGCACAGGT 3377 Query 114540 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 114599 | || | || ||||||| ||||| || || ||||| ||| ||||| ||||||| Sbjct 3378 TCGAGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCCTTGT 3437 Query 114600 AAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCG- 114658 | || ||||| ||||| ||||||||| || | | ||| | ||| |||| | || Sbjct 3438 AGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCACGGCCGTCCACAGCGCGC 3497 Query 114659 GCGGCTGGCACAG-TGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTC 114717 ||| || | | || || || || |||| | |||||||| ||||| || || Sbjct 3498 GCGCCTTGATCGTCTGCCGC--GCGCGGCCCTGGTTCTCGTACTGCGTGTACAGCCGCTC 3555 Query 114718 AAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCA 114777 || || | ||| | || | ||||| || |||| | ||||| ||||| ||||| Sbjct 3556 GAAGTCGGCGCCCCACGAGTCGGCCAGCCCCGGCGCCTCGTGCGGGCAAAAGAGCGACCA 3615 Query 114778 TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAG 114837 | | || ||| || |||| |||||||||||| | |||||| | |||| || Sbjct 3616 GAGCTCGTTCTTCTCCACGCGCTCCATGAAGAGGTCGCACACCCAGAGGCCGTAGAAAAG 3675 Query 114838 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 114897 || || ||| || || || || || || |||| |||| ||| |||||| Sbjct 3676 GTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGTTCTTGCGCAGGTCCAGGAAGGACATGAT 3735 Query 114898 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG---ACCAGCCTG 114954 || ||||||||||| |||||||| || |||| || ||||| || || ||| |||| Sbjct 3736 GTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGCCTCCACCCTG 3795 Query 114955 GTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTG 115014 || || || | ||| ||| || || ||||| ||||| || | | || | || Sbjct 3796 GTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGACCAGGCCGTTCGAGGT 3855 Query 115015 GCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCA 115072 ||| || || || || | || ||| | |||| | ||| || || | | ||| Sbjct 3856 GCCGTTGGTGCCGCGGATGTAGGAGCC--GGTGGCGCGGACGTCGTGAACCGCGAGGCCA 3913 Query 115073 ATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCG 115132 || || || ||| ||| ||||| ||||||| | | || || ||||||| || ||| Sbjct 3914 ATGCCGCCGGCCTGCTTCGAGATCATCGCGCACGTCTTAAGCGTGTCGTAGATGCCCTCG 3973 Query 115133 ATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCA 115192 |||||||| |||| | | || |||||||| ||||| || ||| | || || Sbjct 3974 ATCGAGTCCTCCTTCATGGTGACGAGGAAGCACGACGACAGCTGCGGCATGCACGTGCCG 4033 Query 115193 GCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGT 115251 ||||||||||| || || | |||||| ||||| || | || ||||| ||||| || Sbjct 4034 GCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC-CACTTCTGCGACATGAGGTCGTACGT 4092 Query 115252 CTC 115254 ||| Sbjct 4093 CTC 4095 >seq53 Length=108086 Score = 113 bits (124), Expect = 5e-20 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| || |||||||| || || |||||| ||||| ||||| || Sbjct 12965 GTGGAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCTTGCC 12906 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || || ||||||||||| ||||| || || Sbjct 12905 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 12846 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG--TGTCAAACCACTTCATC 126235 ||||| | | ||| ||||| || || || ||| | | | ||| | |||||| | Sbjct 12845 GGCGAAGCCGACGAGGCGCTCGGCGAACGA-CGC-AGTGGGGTTGTTGATCCACTTGAGG 12788 Query 126236 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 ||||| |||||| | || | || ||||||| ||| || | |||||| Sbjct 12787 GCCCAGGCCGCCTTGGTGCGGACCGAAGGCACGGTCTCGATGGCGTTAAAGAG 12735 >seq311 Length=46126 Score = 100 bits (110), Expect = 3e-16 Identities = 281/425 (66%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 171728 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 171787 || |||||||| || | ||||||| | ||| ||| | || | | |||| ||| | Sbjct 39784 CCGGTGCCAATGCCGGAGCTGCCGTTGATGAGCACCGTGGGCACCACGGGCACATACCAC 39843 Query 171788 TCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCGGA 171847 || || || |||| |||| || || | | ||||| || | | |||||| || | Sbjct 39844 TCGGGCTCGATCGACTGCCCGTCGTCGTTGAGGTAGTTCAGGATCGCGTCGTCGCTGGCC 39903 Query 171848 TCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACGCA 171907 |||| | || | | || ||| | ||||||||||| | || | ||||| Sbjct 39904 GAGAAGACCGTGCGCGTAATGGGGGAGAGATAAGTGAAGATGTAACGCG---GCGACGCG 39960 Query 171908 ---TCTTTGCCACCCATGAGA-CGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGAT 171963 || ||| ||| || | ||||| || || ||||| | ||| || | ||||| Sbjct 39961 GAGTCGCGGCCGCCC-TGCGCGCGCGTACCGAACTGACCGCTCGGCCACAGAAAGTTGAT 40019 Query 171964 ATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTC 172023 ||||| || || | ||||| | |||| || || || || | | ||| |||||||| Sbjct 40020 GTTGTTCGAGCCGACGTAGTTCTGCGCCAGGTTCACGATGGTGCCGGAGAGCGAGACTTC 40079 Query 172024 ACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGC-CAACTGTGCCACCTTCATCT 172082 ||||| ||||||||||| || || || || || ||||| | ||| || ||||| |||| Sbjct 40080 GCCGTGGTGGTAGGCCGAGTTCTCGGCAACGTA-GCCGCTGAGCTGCGCGACCTTGATCT 40138 Query 172083 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGC 172142 | | |||||| | ||||||||| | | ||||| | ||| |||||||||| Sbjct 40139 CGTTAACGAGGTTGCGCTTGAAGCACGCGAAGAGCACCTTGCGCTGACCGGGCTTGAGGC 40198 Query 172143 CGTCG 172147 ||||| Sbjct 40199 CGTCG 40203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348268619120