Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq168 95.1 1e-14 seq3 86.0 7e-12 seq182 82.4 8e-11 >seq168 Length=58069 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||| || || || || || | ||||| |||||||| || ||| ||||| |||||||| Sbjct 1 GTAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTG 60 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151 ||| | || | || |||||||||| ||| || || || | ||| | | ||||||| Sbjct 61 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGGTCTCGATCGTGTCGGA 120 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||||| |||||||| ||| | |||||||| || ||||| ||||| Sbjct 121 GTGGTCGACATCGAGGGTGATGGTCTTGTTGGCGAGCGTCTTCACGAAGATCTGCAT 177 >seq3 Length=187283 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || | ||||| || || || || || |||| || |||||||| || ||| Sbjct 12496 CTCTTTCTGGACGTTGTAGTCGGCAAGGGTGCGGCCGTCGTCGAGCTGCTTGCCCTGGAA 12437 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || || |||| || Sbjct 12436 GATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGT 12377 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||||| || ||||| | ||| || || ||| | || ||||| || Sbjct 12376 CTCGATCGTGTCGGAATGGTCGACATCAAGCGTAATAGTCTTGTTAGCGAGGGTCTTGAC 12317 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 12316 GAAAATCTGCAT 12305 >seq182 Length=55624 Score = 82.4 bits (90), Expect = 8e-11 Identities = 127/180 (71%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||| || || || || || | ||||| |||||||| || ||| ||||| |||||||| Sbjct 55624 GTAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTG 55565 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151 ||| | || | || |||||||||| ||| || || |||| ||| | | ||||| Sbjct 55564 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATGGTGTC--- 55508 Query 42152 CGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || ||||| | |||||||| ||| || || ||||| || || || ||||| Sbjct 55507 CGAGTGGTCGACATCAAGAGTGATGGTCTTGTTCGCGAGGGTCTTCACGAAAATCTGCAT 55448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543207951825760