Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq30 439 2e-118 >seq30 Length=128594 Score = 439 bits (486), Expect = 2e-118 Identities = 1111/1670 (67%), Gaps = 51/1670 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||| | |||||| || || ||| |||||||| |||||| | | ||| | Sbjct 4230 TACGACTACTTCGGCTTCAAGACGCTCGAGCGCTCGTACCTGCTCAAGCTCCACGGCCAG 4171 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 | |||||| || || || |||| |||||||||||| ||| || ||| | || || Sbjct 4170 ATCGTCGAGCGCCCACAGCACATGCTCATGCGCGTCGCCTGCGGCATCCACTTCAACAAC 4111 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACC 93897 || | || | | | | | |||| | | ||| ||| ||| ||| || Sbjct 4110 CTGGCCGCTGCGATCGAGACGTACGACCTCATGTCGCAGAAGTGGTTCACCCACGCCTCC 4051 Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || || || |||||||| || || |||| ||| |||| ||||| ||||| | || Sbjct 4050 CCCACGCTCTTCAACGCCGGCACGTGCATGCCGCAGCTGTCGTCGTGCTTCCTCGTCACC 3991 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| ||||| ||| || || | ||||| || ||| || |||| ||||| Sbjct 3990 ATGAAGGAGGACTCGATCGAGGGCATCTACGACACGCTTAAGACGTGCGCGATGATCTCG 3931 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || | || || || || || || || |||||||| || |||| || ||||||||| Sbjct 3930 AAGCAGGCCGGCGGCATTGGCCTCGCGGTTCACGACGTCCGCGCCACCGGCTCCTACATC 3871 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 ||||| ||||| |||||||| |||||||| ||||| ||||| || || ||||||||| || Sbjct 3870 CGCGGCACCAACGGCACCTCGAACGGCCTGGTCCCGATGCTGCGCGTGTTCAACAACACG 3811 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 ||||||||||| ||||||||||| || | | ||||| | ||||| ||||| || ||| Sbjct 3810 GCGCGCTACGTCGACCAGGGTGGAGGCCGCCGCAAGGGCGCATTCGCCGTCTACCTGGAG 3751 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || |||||||| ||| | | | ||| | |||||||| |||||||||||| ||| | Sbjct 3750 CCGTGGCACGCCGACATCATGTCCTTCCTGGACCTGCGCAAGAACCACGGCTCCGAGGAG 3691 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | | || | ||||| ||||||| ||||||||| ||||| || ||| | ||||| Sbjct 3690 GCGCGCGCGCGCGACCTTTTCTACGGCCTCTGGGTGTGCGACCTCTTCATGGAGCGCGTG 3631 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 ||||| ||| |||| || ||||| || | || || || ||| ||||| | Sbjct 3630 GAGAAGAACGAGCTCTGGTCGCTCTTTTGCCCGCACGAGGCGCCGGGGCTGGCCGAC--T 3573 Query 94378 TGTGGATCGC--GTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGA 94435 |||| ||| || || |||| | | ||||| |||||| || || Sbjct 3572 CGTGGGGCGCCGACTTCGAGCGGCTGTACACGCAGTACGAGAACCAGGGCCGCGCGCGGC 3513 Query 94436 AGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTG---GACGTACAGGTGGAGACGG 94492 || || | || | ||||||| | |||| || | ||| |||||||| Sbjct 3512 AGACGATCAAGGCGCGCGCGCTGTGG---ACGGCCGTGCTCGAAGCGCAGCAGGAGACGG 3456 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 | |||||||||||| | | ||||||| | |||| |||||| ||||||||| |||| | Sbjct 3455 GCACGCCCTACATCCTCTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCAGAACCTGG 3396 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | |||| ||||||| |||||||| ||||| |||||||| || || || |||||| Sbjct 3395 GCACGATCCGCTGCTCGAACCTGTGCACGGAGATCGTCGAGTACACGTCGCCCGACGAGG 3336 Query 94613 TTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA--GATGCCTACAC 94670 | || ||||| ||||| | ||| ||| || | ||||| ||| | || | Sbjct 3335 TGGCCGTGTGCAACCTCGCCTCGATCGCGCTCAACCGCTTCGT-CGACGAACGCACGGGC 3277 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG-- 94728 |||| |||| || ||| ||| |||| ||| ||| | | | | Sbjct 3276 ACCTACGACTTCCAGCG-CCTGTTTGAG---GTGA----CGC---AAG--TCGCCACGCG 3230 Query 94729 -AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 ||||| ||| | || ||||||| ||| | ||||| ||| ||||||| | || Sbjct 3229 CAACCTCAACCGCGTCATCGACATCAACCTGTACCCGGTCAAGGAGGCGCGCACGAGCAA 3170 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || || || |||||||| |||| |||||||| | || |||||||| | | || Sbjct 3169 CATGCGCCACCGCCCCATCGGGCTCGGTGTCCAGGGCCTGGCCGACGCGCTCATCCTTAT 3110 Query 94848 GCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907 ||| ||||| ||||| || | || ||| || |||| |||| || | | ||| Sbjct 3109 GCGGCTGCCGTACGAGTCCGAGGAGGCGCAGGCGCTGAACCGCGACATCTTTGCGACCAT 3050 Query 94908 TTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCG-GACGGCGGGCCACACG 94966 || | || || ||| || | || ||||| || || ||||||| | ||| Sbjct 3049 CTACTTCGCCGCGCTGACGGCGTCGTGCGACATGGCC-GAGCGCGACGGCG---CGTACG 2994 Query 94967 AATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024 | || |||| || ||||| | | | | ||| | ||||||||| | ||||| || Sbjct 2993 AGTCCTTCCCGGGCTCGCCGGCCTCG--CGCGGCGAGCTGCAGTTCGACATGTGGGGCGT 2936 Query 95025 GAAGCCCTCGGGTCTGTACG---ACTGGGAAGCT-CTACGCGCT----GATGTTATCAAA 95076 | ||||| || || || |||||| || |||||| || ||||| Sbjct 2935 GGAGCCCGCGACGGTGGGCGGGCGCTGGGA--CTGGGCCGCGCTCAAGGAGCGCATCAAG 2878 Query 95077 C---ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 | ||| || ||| |||| |||||||| ||||||||||||||| |||| ||||| Sbjct 2877 CGCGTCGGGCTGCGCAACTCGCTTCTTGTGGCGCCCATGCCCACGGCCAGCACGTCGCAG 2818 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTG 95193 ||||| |||||||||||||||||||| ||| ||| || ||| | ||| |||| | Sbjct 2817 ATCCTGGGCAACAACGAGTCGTTCGAGGCCTACACGTCGAACCTCTACGTGCGGCGCACG 2758 Query 95194 CTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGT 95253 || ||||| || ||| | ||||| |||||| || || ||||| | | ||| Sbjct 2757 CTGGCCGGCGAGTTCGTGTGCGTCAACTCGCACCTGCTGCGCGACCTCATCCGCCAGGGA 2698 Query 95254 GTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATC 95313 ||||| | | | |||||||| | || | | ||||||||| || ||| | Sbjct 2697 CTGTGGAACCAGACGCTCAAGAACAAGCTCATCGCCAACAACGGCTCTGTGCAGGGGCTG 2638 Query 95314 CCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGAT 95363 | | || || |||||| | | | |||||||||| ||||||||||| Sbjct 2637 ACCGAGATCCCCGAGGACTTGCGCGAGATCTACAAGACGGTGTGGGAGAT 2588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494718784595440