Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq30 295 7e-75 seq53 122 9e-23 >seq30 Length=128594 Score = 295 bits (326), Expect = 7e-75 Identities = 914/1394 (66%), Gaps = 44/1394 (3%) Strand=Plus/Plus Query 153090 TCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACC 153149 || || || ||||| ||||| || || || | |||| | || || |||||| |||||| Sbjct 2792 TCGAACGACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGGGCATGGGCGCCACA 2851 Query 153150 AACAAAGAATTCCGCAAGCCGT-GCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCA 153208 | | || || |||| ||| ||||| || || ||||| | ||| ||| ||||| Sbjct 2852 AGAAGCGAGTTGCGCAGCCCGACGCGCTTGA-TGCGCTCCTTGAGCGCGGCCCAGTCCCA 2910 Query 153209 CAGC--GCCGACGGTGTCGCGTTCCAC-------ATGTCGTACTGTAACACTCCTCGACT 153259 || ||| || || || | ||||| |||||| |||| | | | || || Sbjct 2911 GCGCCCGCCCACCGTCGCGGGCTCCACGCCCCACATGTCGAACTGCAGCTCGCCGCGCGA 2970 Query 153260 GGCGGGACTGCCGGCAAACGTACT-GTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAG 153318 ||| || ||| | || | ||| ||| ||||||||| | ||||| ||||| | Sbjct 2971 GGCCGGCGAGCCCGGGAAGG-ACTCGTACGCGCCGTCGCGCTCGGCCATGTCGCACGACG 3029 Query 153319 CCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTT 153378 || |||||| | |||| ||||| | ||| | || || | ||| || | Sbjct 3030 CCGTCAGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGCGGTTCAGCGCCTGCGCCTCCT 3089 Query 153379 CGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGC 153438 || ||||||||||| |||| || | | ||||||||||| ||||||| ||||| | Sbjct 3090 CGGACTCGTACGGCAGCCGCATAAGGATGAGCGCGTCGGCCAGGCCCTGGACACCGAGCC 3149 Query 153439 CGATGGGTCGATGCTTCTCGTTGCT-----GCGCCTCGCGCTCGCTATGGGATAGTGATT 153493 ||||||| || || | |||||| ||||||| || | | || || | || Sbjct 3150 CGATGGGGCGGTGGCGCATGTTGCTCGTGCGCGCCTC---CTTG--ACCGGGTACAGGTT 3204 Query 153494 GCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTC 153553 | ||||| | ||||||||||||| | |||| || | | | || || Sbjct 3205 GATGTCGATGACGCGGTTGAGGTTGCGCGTGGCGACTTGCGTCACCTCAAACAGGCGCTG 3264 Query 153554 GAAATCATAGGT--CATTTCGT-CGACGCGTACGCATCGATTCACGGCAATAGACGCCAG 153610 ||| || ||||| | | ||| || || ||| | || || | || || || || || Sbjct 3265 GAAGTCGTAGGTGCCCGTGCGTTCGTCG---ACGAAGCGGTTGAGCGCGATCGAGGCGAG 3321 Query 153611 ATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGC 153669 || || |||||| ||| |||| || || |||||| |||||||| | ||| ||||| Sbjct 3322 GTTGCACACGGCCACCTCGTCGGGCGACG-TGTACTCGACGATCTCCGTGCACAGGTTCG 3380 Query 153670 TGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGA 153729 ||| || ||||| || ||||| || ||||| ||||||||||| ||| ||| Sbjct 3381 AGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCCTTGTAGA 3440 Query 153730 GCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCG 153789 | ||||| || ||| ||||| |||| ||||| | | | ||| | ||| Sbjct 3441 GGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCACGGCCGTCCACAGCGCGCGCG 3500 Query 153790 CTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACT 153849 | | | |||||| |||||||| | ||||||| || |||||| ||||| || | Sbjct 3501 CCTTGATCGTCTGCCGCGCGCGGCCCTGGTTCTCGTACTGCGTGTACAGCCGCTCGAAGT 3560 Query 153850 CGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATAT 153909 || |||| | ||||||| || || || || ||||| || | |||||||| | | Sbjct 3561 CGGCGCCCCACGAGTCGGCCAGCCCCGGCGCCTCGTGCGGGCAAAAGAGCGACCAGAGCT 3620 Query 153910 CGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGC 153969 ||| | ||||| |||||| || || ||||||||| |||| | ||||||| Sbjct 3621 CGTTCTTCTCCACGCGCTCCATGAAGAGGTCGCACACCCAGAGGCCGTAGAAAAGGTCGC 3680 Query 153970 GCGC-CTTGCAATCCTCCGCGCCCATGTT---GCGTTTCAGATTGAGCACGCTATAGATG 154025 |||| | || ||||| | ||| ||| ||| ||| | || | | |||| Sbjct 3681 GCGCGCGCGCC-TCCTCGGAGCCGTGGTTCTTGCG---CAGGTCCAGGAAGGACATGATG 3736 Query 154026 TCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT---TCCGCCCTGA 154082 ||||||||||| || || | ||||||||| | || || || || ||| ||||| Sbjct 3737 TCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGCCTCCACCCTGG 3796 Query 154083 TCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTG 154142 ||||||| |||| || | |||||||| ||||||| ||| || |||||||| | | |||| Sbjct 3797 TCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGACCAGGCCGTTCGAGGTG 3856 Query 154143 CCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATG 154202 |||||||| ||| | | |||| |||||| || | || || | ||||||| Sbjct 3857 CCGTTGGTGCCGCGGATGTAGGAGCCGGTGGCGCGGACGTCGTGAACCGCGAGGCCAATG 3916 Query 154203 CCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGAT 154261 |||||| | | ||| || || ||||| ||| ||||| ||||||||| ||||| Sbjct 3917 CCGCCGGCCTGCTTCGAGATCATCGCGCACGTC-TTAAGCGTGTCGTAGATGCCCTCGAT 3975 Query 154262 GCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGC 154321 || || | | || | ||| ||||| ||| ||||| |||| ||| || || Sbjct 3976 CGAGTCCTCCTTCATGGTGACGAGGAAGCACGACGACAGCTGCGGCATGCACGTGCCGGC 4035 Query 154322 CGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTC 154381 ||||| ||||| ||||| || ||| || || ||| | | |||||| || Sbjct 4036 GTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTGCGACATGAGGTCGTACGTCTC 4095 Query 154382 GATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTG 154441 ||| || | | | | | | ||| |||||| ||||||||||||||||||||||| Sbjct 4096 GATCGCAGCGGCCAGGTTGTTGAAGTGGATGCCGCAGGCGACGCGCATGAGCATGTGCTG 4155 Query 154442 CGGACGTTCGGCGA 154455 || || ||| ||| Sbjct 4156 TGGGCGCTCGACGA 4169 >seq53 Length=108086 Score = 122 bits (134), Expect = 9e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 52318 TCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCG 52377 ||||| |||||| | || |||| ||||| ||||| | ||||||||| | | | Sbjct 12748 TCGAGACCGTGCCTTCGGTCCGCACCAAGGCGGCCTGGGCCCTCAAGTGGATCAACAACC 12807 Query 52378 ACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttttttt 52437 ||| || || | ||||||||| | || | ||||||| ||||||||| | || || | Sbjct 12808 CCACTGCGTCGTTCGCCGAGCGCCTCGTCGGCTTCGCCTGCGTCGAGGGCATCTTCTTCT 12867 Query 52438 CCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGT 52497 ||||| ||| ||||||||| | | || | | |||| |||||||| || || | Sbjct 12868 CCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCAAGATGCCCGGACTCACCT 12927 Query 52498 TCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 || ||||||| | || ||||||||||| || || ||||| ||||| || ||||| Sbjct 12928 TCTCCAACGAGCTCATCTCGCGCGACGAGGGCCTCCACACCGACTTCGCCTGCCT 12982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257970858080