Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq30 100 3e-16 >seq30 Length=128594 Score = 100 bits (110), Expect = 3e-16 Identities = 275/417 (66%), Gaps = 7/417 (2%) Strand=Plus/Minus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACC 122975 || || ||||||||||||||||| ||| | ||| | || | | |||| | Sbjct 4155 CAGCACATGCTCATGCGCGTCGCCTGCGGCATCCACTTCAACAACCTGGCCGCTGCGATC 4096 Query 122976 GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCC 123035 || || ||||| | ||||| || || | ||||| ||||| ||||| | ||| | Sbjct 4095 GAGACGTACGACCTCATGTCGCAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAAC 4036 Query 123036 GCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGC 123095 ||||||||| |||| ||| |||| ||||| || | ||||| || || ||| Sbjct 4035 GCCGGCACGTGCATGCCGCAGCTGTCGTCGTGCTTCCTCGTCACCATGAAGGAGGACTCG 3976 Query 123096 ATCACCGGTATCTATGAAACT-TTGCG-CGATTGCGCGTTGATTTCCAAATTTGGCGGCG 123153 ||| || ||||| || || || | || |||||| |||| || || | ||||| Sbjct 3975 ATCGAGGGCATCTACGACACGCTTAAGACG--TGCGCGATGATCTCGAAGCAGGCCGGCG 3918 Query 123154 GCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACG 123213 |||| ||| | || |||||||| | | | ||| | |||| | ||||| ||| Sbjct 3917 GCATTGGCCTCGCGGTTCACGACGTCCGCGCCACCGGCTCCTACATCCGCGGCACCAACG 3858 Query 123214 GAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCG 123273 | | | | ||| || | | |||||||| || | ||| ||| | | ||| |||||| Sbjct 3857 GCACCTCGAACGGCCTGGTCCCGATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTCG 3798 Query 123274 ACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACG 123327 ||||| || ||| ||||| ||||| | || |||| || || |||||||||| Sbjct 3797 ACCAGGGTGGAGGCCGCCGCAAGGGCGCATTCGCCGTCTACCTGGAGCCGTGGCACG 3741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999165871440