Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq30 279 6e-70 seq311 109 7e-19 seq53 109 7e-19 >seq30 Length=128594 Score = 279 bits (308), Expect = 6e-70 Identities = 1089/1684 (65%), Gaps = 40/1684 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||||| ||||||||||| |||| |||||| || || | ||||| |||| | Sbjct 2426 CGGAGGTAGTACATGCCCGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGCATCGAGGTC 2485 Query 115618 AACTTGGAGAGTGTTGGACTTTC--CATGAAGAGGTTCATACTTTGGGATTGATCGATGA 115675 | ||||| | |||| || || |||| || ||| | || || || |||||| Sbjct 2486 AGCTTGGCGTA-GTTG-ACGTTGGGCATGTGGACGTTGAACGACTGCGACTGGTCGATGT 2543 Query 115676 A-GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTT 115734 | ||| || || || || ||||| | || | ||| ||| || |||||||| || Sbjct 2544 ACGCG-CCGCGGTCGGCGGCCATGTTGATGAGCGTCTTGCCCTTCATCTCCCACACCGTC 2602 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||||| | | || || ||||| || | || | |||||| || Sbjct 2603 TTGTAGATCTCGCGCAAGTCCTCGGGGATCTCGGTCAGCCCCTGCACAGAGCCGT-TG-- 2659 Query 115795 TTGACCATGAGATCCTTCAT-ATCCTTTGA--CCAGAGACCAATCTTCTTGAGATCCTCC 115851 ||| | ||||| | ||| | | | | || ||| || || |||| || | Sbjct 2660 TTGGCGATGAGCTTGTTCTTGAGCGTCTGGTTCCACAGTCCCTGGCGGATGAGGTCGCGC 2719 Query 115852 ACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTG 115911 | |||||| ||||| || ||||| || || || ||||| | || |||| ||| Sbjct 2720 AGCAGGTGCGAGTTGACGCACACGAACTCGCCGGCCAGCGTGCGCCGCACGTAGAGGTTC 2779 Query 115912 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 115971 | |||||| | ||| || |||| ||||| |||| ||| || | ||| ||| |||||| Sbjct 2780 GACGTGTAGGCCTCGAACGACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGGGC 2839 Query 115972 ATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCG 116031 ||||| |||| ||||| |||||| || || || | | | ||||| |||||||| ||| Sbjct 2840 ATGGGCGCCACAAGAAGCGAGTTGCGCAGCCCGACGCGCTTGATGCGCTCCTTGAGCGCG 2899 Query 116032 TCCCAGTCGTAGTTG------AGCTTTGT---CTCCCCCTCCCACATATCAAACTGGAGG 116082 ||||||| || | | | | |||| | ||||||| || ||||| || Sbjct 2900 GCCCAGTCCCAGCGCCCGCCCACCGTCGCGGGCTCCACGCCCCACATGTCGAACTGCAGC 2959 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || | || || ||||| ||| || | ||| || | ||| || ||| |||| Sbjct 2960 TCGCCGCGCGAGGCCGGCGAGCCCGGGAAGGACTCGTACGCGCCGTCGCGCTCGGCCATG 3019 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATG-CGAGCATTCATTGC 116201 ||| | |||| || || ||| || || ||| |||| ||| || | |||| || Sbjct 3020 TCGCACGACGCCGTCAGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGCGG-TTCAGCGC 3078 Query 116202 CTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTT 116260 || ||||| ||||| || ||| || || || || || | | || || || || | Sbjct 3079 CTGCGCCTCCTCGGACTCGTACGGCAGCCG-CATAAGGATGAGCGCGTCGGCCAGGCCCT 3137 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 116320 |||||||||| || || ||||| || | ||| || | | || || || || || | Sbjct 3138 GGACACCGAGCCCGATGGGGCGGTGGCGCATGTTGCTCGTGCGCGCCTCCTTGACCGGGT 3197 Query 116321 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 116380 | | || | ||||| || | || || || ||| | || | || | ||| | Sbjct 3198 ACAGGTTGATGTCGATGACGCGGTTGAGGTTGCGCGTGGCGACTTGCGTCACCTCAAACA 3257 Query 116381 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 116440 | | | | || | ||| || ||| | ||| | || ||||| || | Sbjct 3258 GGCGCTGGAAGTCGTAGGTGCCCGTGCGTTCGTCGACGAAGCGGTTGAGCGCGATCGAGG 3317 Query 116441 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 116500 | || || ||||| | ||| || |||||||| | || ||||| |||| | Sbjct 3318 CGAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACTCGACGATCTCCGTGCACAGGT 3377 Query 116501 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 116560 | || | || ||||||| ||||| || || ||||| ||| ||||| ||||||| Sbjct 3378 TCGAGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCCTTGT 3437 Query 116561 AGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG- 116619 |||| || || ||||| ||||||||| || | | ||| | ||| |||| | || Sbjct 3438 AGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCACGGCCGTCCACAGCGCGC 3497 Query 116620 GCGGCTGGCACAG-TGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTC 116678 ||| || | | || || || || |||| | |||||||| ||||| || ||| Sbjct 3498 GCGCCTTGATCGTCTGCCGC--GCGCGGCCCTGGTTCTCGTACTGCGTGTACAGCCGCTC 3555 Query 116679 AAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCA 116738 || || | ||| | || | ||||| || |||| | || || ||||| ||||| Sbjct 3556 GAAGTCGGCGCCCCACGAGTCGGCCAGCCCCGGCGCCTCGTGCGGGCAAAAGAGCGACCA 3615 Query 116739 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGA 116797 | | || ||| || |||| |||||||||||| | |||||| |||| |||| | Sbjct 3616 GAGCTCGTTCTTCTCCACGCGCTCCATGAAGAGGTCGCACACCCAGAG-GCCGTAGAAAA 3674 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 | || || ||| || || || || || || |||| |||| ||| ||||| Sbjct 3675 GGTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGTTCTTGCGCAGGTCCAGGAAGGACATGA 3734 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG---ACCAGCCT 116914 | || ||||||||||| |||||||| || |||| || |||||||| || ||| ||| Sbjct 3735 TGTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGCCTCCACCCT 3794 Query 116915 GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATT 116974 ||| || || | |||||| ||| || ||||| ||||| || | | || | || Sbjct 3795 GGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGACCAGGCCGTTCGAGG 3854 Query 116975 GGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACC 117032 ||| || || || || | || ||| | | |||| | ||| ||||| | | || Sbjct 3855 TGCCGTTGGTGCCGCGGATGTAGGAGCC--GGTGGCGCGGACGTCGTGAACCGCGAGGCC 3912 Query 117033 AATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATC 117092 ||| || || ||| ||| ||||| |||||| | | || || ||||||| || || Sbjct 3913 AATGCCGCCGGCCTGCTTCGAGATCATCGCGCACGTCTTAAGCGTGTCGTAGATGCCCTC 3972 Query 117093 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACC 117152 ||||||||| |||| | | || ||||||||| ||||| || ||| | || || Sbjct 3973 GATCGAGTCCTCCTTCATGGTGACGAGGAAGCACGACGACAGCTGCGGCATGCACGTGCC 4032 Query 117153 AGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGG 117211 ||||||||||| || || | |||||| ||||| || | || ||||| ||||| | Sbjct 4033 GGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC-CACTTCTGCGACATGAGGTCGTACG 4091 Query 117212 TCTC 117215 |||| Sbjct 4092 TCTC 4095 >seq311 Length=46126 Score = 109 bits (120), Expect = 7e-19 Identities = 283/425 (67%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807 || |||||||| || | ||||||| | ||| ||| | || | | |||| ||| | Sbjct 39784 CCGGTGCCAATGCCGGAGCTGCCGTTGATGAGCACCGTGGGCACCACGGGCACATACCAC 39843 Query 175808 TCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCGGA 175867 || || || |||| |||| || |||| | ||||| || | | ||| || || | Sbjct 39844 TCGGGCTCGATCGACTGCCCGTCGTCGTTGAGGTAGTTCAGGATCGCGTCGTCGCTGGCC 39903 Query 175868 TCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACGCA 175927 |||| | || | | || ||| | ||||||||||| | || | ||||| Sbjct 39904 GAGAAGACCGTGCGCGTAATGGGGGAGAGATAAGTGAAGATGTAACGCG---GCGACGCG 39960 Query 175928 ---TCTTTGCCACCCATGAGA-CGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983 || ||| ||| || | ||||| || || ||||| | ||| || | ||||| Sbjct 39961 GAGTCGCGGCCGCCC-TGCGCGCGCGTACCGAACTGACCGCTCGGCCACAGAAAGTTGAT 40019 Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTC 176043 ||||| ||||| | |||| | ||||| || || || || | | ||| |||||||| Sbjct 40020 GTTGTTCGAGCCGACGTAGTTCTGCGCCAGGTTCACGATGGTGCCGGAGAGCGAGACTTC 40079 Query 176044 ACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGC-CAACTGCGCCACCTTCATCT 176102 ||||| ||||||||||| || || || || || ||||| | |||||| ||||| |||| Sbjct 40080 GCCGTGGTGGTAGGCCGAGTTCTCGGCAACGTA-GCCGCTGAGCTGCGCGACCTTGATCT 40138 Query 176103 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGC 176162 | | |||||| | ||||||||| | | ||||| | ||| |||||||||| Sbjct 40139 CGTTAACGAGGTTGCGCTTGAAGCACGCGAAGAGCACCTTGCGCTGACCGGGCTTGAGGC 40198 Query 176163 CGTCG 176167 ||||| Sbjct 40199 CGTCG 40203 >seq53 Length=108086 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| || |||||||| || || |||||| || || ||||| || Sbjct 12965 GTGGAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCTTGCC 12906 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || ||||| ||||||||||| ||||| || || Sbjct 12905 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 12846 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| | | || |||||||| || || Sbjct 12845 GGCGAAGCCGACGAGGCGCTCGGCGAACGA 12816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501724448240