Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq30 188 1e-42 >seq30 Length=128594 Score = 188 bits (208), Expect = 1e-42 Identities = 482/723 (67%), Gaps = 8/723 (1%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| |||||||| ||||||| ||| ||| | | |||| | ||||||||| || Sbjct 3355 CTCGACGATCTCCGTGCACAGGTTCGAGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGA 3414 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||||||||| || | ||||||||| | ||| | ||| | || ||||| ||| | | Sbjct 3415 CTTGCGGTTGCACGCGTCCTTGTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTC 3474 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCA-CGTACATCCCTTGAGACT 205061 || | | ||||||| |||| |||| | || | || | |||| | || Sbjct 3475 GAGCACGGCCGTCCACAGCGCGCGCGCCTTGATCGTCTGCCGCGCGCGGCCCTGGTT-CT 3533 Query 205062 CGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATT 205121 |||| | ||||||||| | | ||||| | || || ||| |||||| || | Sbjct 3534 CGTACTGCGTGTACAGCCGCTCGAAGTCGGCGCCCCACGAGTCGGCCAGCCCCGGCGCCT 3593 Query 205122 TTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGTCG 205180 | || || | || ||||| | || | || ||| ||| | |||||| || |||||| Sbjct 3594 CGTGCGGGCAAAAGAGCGACCAGAGCTCGTTCTTCTC-CACGCGCTCCATGAAGAGGTCG 3652 Query 205181 CTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTT 205240 | | ||| |||||||| || || || || || | | ||| || ||||||| Sbjct 3653 CACACCCAGAGGCCGTAGAAAAGGTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGTTCTTG 3712 Query 205241 TTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCG 205300 || |||||| | | | |||||||||||||||||||| | | ||||| | |||| Sbjct 3713 CGCAGGTCCAGGAAGGACATGATGTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCG 3772 Query 205301 CC-TGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAG 205359 || | || | ||| ||||||||| || ||| | | | |||||| || ||||| Sbjct 3773 CCCTTGCGGCGGCCTCC-ACCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAG 3831 Query 205360 CATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCT 205419 |||||| ||||| ||||| | ||| ||||| |||| | |||| ||||| || | Sbjct 3832 CATCGGGACCAGGCCGTTCGAGGTGCCGTTGGTGCCGCGGATGTAGGAGCCGGTGGCGCG 3891 Query 205420 CACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC-TCTT 205478 |||| | | || |||||| ||||| | ||| | |||| |||||| |||| Sbjct 3892 GACGTCGTGAACCGCGAGGCCAATGCCGCCGGCCTGCTTCGAGATCATCGCGCACGTCTT 3951 Query 205479 GCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAG 205538 || ||| ||||||||| |||| || || ||| || || || || ||||||| | Sbjct 3952 A-AGCGTGTCGTAGATGCCCTCGATCGAGTCCTCCTTCATGGTGACGAGGAAGCACGACG 4010 Query 205539 CCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCT 205598 ||||| | | | ||||| |||| ||||||||||||| ||||||| |||| | || Sbjct 4011 ACAGCTGCGGCATGCACGTGCCGGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACT 4070 Query 205599 TCT 205601 ||| Sbjct 4071 TCT 4073 Score = 170 bits (188), Expect = 3e-37 Identities = 336/488 (69%), Gaps = 12/488 (2%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 ||| | |||||||| ||||||| ||||| ||| || | | || ||||||||||| | Sbjct 2386 GTCGAGCGTGAACTTGATGGCGTCGACGGC-GGCGCGCGTGCGGAGGTAGTACATGCCCG 2444 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| |||||||||| |||| |||| | |||||| || | ||| ||| |||| || Sbjct 2445 TCTTGAGGCCCTTCTTCCACGCGTAAAAGTGCATCGAGGTCAGCTTGGCGTAGTTGACGT 2504 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 || |||||| | ||| | ||||| ||||||||| | ||||| || || |||||| Sbjct 2505 TGGGCATGTGGACGTTGAACGACTGCGACTGGTCGATG-TACGCGCCGCGGTCGGCGGCC 2563 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || ||||| | ||||| | |||||||||||||||||| | | || | || Sbjct 2564 ATGTTGATGAGCGTCTTGCCCTTCATCTCCCACACCGTCTTGTAGATCTCGCGCAAGTCC 2623 Query 204080 TGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT--- 204135 | || | || || |||| | |||||||||| ||| || || | || | Sbjct 2624 TCGGGGATCTC-GGTCAGCCCCTGCACAGAGCCGTTGTTGGCGATGAGCTTGTTCTTGAG 2682 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 ||||| | ||||| ||| | ||| || || |||| |||||| | ||||| | Sbjct 2683 CGTCTGGT---TCCACAGTCCCTGGCGGATGAGGTCGCGCAGCAGGTGCGAGTTGACGCA 2739 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 | || || |||| |||| | || | | ||||| ||| | | ||||||| Sbjct 2740 CACGAACTCGCCGGCCAGCGTGCGCCGCACGTAGAGGTTCGACGTGTAGGCCTCGAACGA 2799 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | ||||| | |||||||||||||||||||| |||| || || || Sbjct 2800 CTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGGGCATGGGCGCCACAAGAAGCGA 2859 Query 204316 GTTGCGCA 204323 |||||||| Sbjct 2860 GTTGCGCA 2867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795148103239840