Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3 111 4e-19 seq182 98.7 2e-15 seq168 89.7 1e-12 seq681 87.8 4e-12 seq651 86.0 1e-11 >seq3 Length=187283 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || ||||| || |||||||||||||| || | || | || || Sbjct 12516 AGTACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGCAAGGGTGCGGCCGTCG 12457 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||| |||||||||||||| ||| || || ||| Sbjct 12456 TCGAGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 12397 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| |||| |||| ||||| | || ||||| | ||| || ||| Sbjct 12396 TGGATCTTCTGCTTGACGGTCTCGATCGTGTCGGAATGGTCGACATCAAGCGTAATAGTC 12337 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | ||| || || || ||||| || Sbjct 12336 TTGTTAGCGAGGGTCTTGACGAAAATCTG 12308 >seq182 Length=55624 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 199453 GTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTG 199512 |||||| || | || | ||||| || |||||||| || |||||||||||||||||| Sbjct 55624 GTAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTG 55565 Query 199513 GTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGT 199572 |||||| || || || ||||| ||||| ||||| |||| |||| |||||| | Sbjct 55564 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATGGTGTCCGA 55505 Query 199573 TGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | ||||| ||||| || ||| || ||||| ||||| || Sbjct 55504 GTGGTCGACATCAAGAGTGATGGTCTTGTTCGCGAGGGTCTTCACGAAAATCTG 55451 >seq168 Length=58069 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 199453 GTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTG 199512 |||||| || | || | ||||| || |||||||| || |||||||||||||||||| Sbjct 1 GTAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTG 60 Query 199513 GTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGT 199572 |||||| || || || ||||| ||||| |||||||||| |||| ||||| | Sbjct 61 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGGTCTCGATCGTGTCGGA 120 Query 199573 TGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | ||||| ||||| | ||| || ||||| || || || Sbjct 121 GTGGTCGACATCGAGGGTGATGGTCTTGTTGGCGAGCGTCTTCACGAAGATCTG 174 >seq681 Length=11217 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||| || || ||||| || ||| | ||| ||||||| || | ||| | ||||| Sbjct 3217 AGGATAAAATGCAGAGTATCTTCTTTTCGAACGCTGTAGTCGGCAAGAGTGCGGCCATCA 3158 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC-TC 199536 || |||||||| || |||||| || |||||||||||||| ||| || || ||| || Sbjct 3157 TCGAGCTGCTTGCCCTGGAAGATAAGGCGCTGCTGGTCCGGGGGAATGCCCTC-CGCGTC 3099 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| | ||| || | || | |||||| | || ||| | | |||||||| Sbjct 3098 CTGGATCTTCTACTTAACAGTCTCAATGGTGTCGGAGTGATCAACAACAAGGGTGATCGT 3039 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||| | ||||| || || ||||| Sbjct 3038 CTTGTTGGCAAGAGTCTTAACGAAAAT 3012 >seq651 Length=6762 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||| ||| | || | ||||| ||||||||||| || | ||| | |||| Sbjct 733 AGGACAAGGTTCAGATTAGATCCATTTTGAACGTTGTAGTCGGCAAGAGTGCGGTCATCC 674 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||| || ||||||| |||| ||| || || ||| Sbjct 673 TCGAGCTGCTTGCCCTGGAAGATAAGGCGCTGCTCGTCCACGGGAATGCCCTCCTTGTCC 614 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 |||||||| || || || | || |||||||| Sbjct 613 TGAATCTTCTGTTTAACAGTTTTAACGGTGTC 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178910815077838