Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 113 5e-20 seq168 95.1 1e-14 seq182 87.8 2e-12 seq651 84.2 2e-11 >seq3 Length=187283 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||| |||||||||| || ||||| ||||||||||||||||||| ||| Sbjct 12496 CTCTTTCTGGACGTTGTAGTCGGCAAGGGTGCGGCCGTCGTCGAGCTGCTTGCCCTGGAA 12437 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||||| ||||| || Sbjct 12436 GATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGT 12377 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||||| || ||||| | ||| || || ||| | || || || || Sbjct 12376 CTCGATCGTGTCGGAATGGTCGACATCAAGCGTAATAGTCTTGTTAGCGAGGGTCTTGAC 12317 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 12316 GAAAATCTGCAT 12305 >seq168 Length=58069 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 |||||| | || ||||| | || |||||||||||||| ||| || | |||||||| Sbjct 1 GTAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTG 60 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCT 46536 ||| | || | || |||||||||| |||||||| ||| | ||| | | ||||||| Sbjct 61 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGGTCTCGATCGTGTCGGA 120 Query 46537 CGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| | |||||||| ||| | ||||| || || ||||| ||||| Sbjct 121 GTGGTCGACATCGAGGGTGATGGTCTTGTTGGCGAGCGTCTTCACGAAGATCTGCAT 177 >seq182 Length=55624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 |||||| | || ||||| | || |||||||||||||| ||| || | |||||||| Sbjct 55624 GTAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTG 55565 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCT 46536 ||| | || | || |||||||||| |||||||| ||||| ||| | | ||||| Sbjct 55564 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATGGTGTC--- 55508 Query 46537 CGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || ||||| | |||||||| ||| || || || || || || || ||||| Sbjct 55507 CGAGTGGTCGACATCAAGAGTGATGGTCTTGTTCGCGAGGGTCTTCACGAAAATCTGCAT 55448 >seq651 Length=6762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||||| | |||||||||| |||||||| || || |||||||||||||| ||| || Sbjct 709 TTTTGAACGTTGTAGTCGGCAAGAGTGCGGTCATCCTCGAGCTGCTTGCCCTGGAAGATA 650 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCT 46511 | |||||||| ||| | || | || |||||||||| ||||||| Sbjct 649 AGGCGCTGCTCGTCCACGGGAATGCCCTCCTTGTCCTGAATCTTCT 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233355247280