Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq53 129 6e-25 >seq53 Length=108086 Score = 129 bits (142), Expect = 6e-25 Identities = 223/324 (69%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| || |||||| || | ||||||||| | || ||||| |||||| ||| || Sbjct 12983 CAGGCAGGCGAAGTCGGTGTGGAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGT 12924 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | |||||||| |||||| || |||||||| || |||||| ||| ||| || || Sbjct 12923 GAGTCCGGGCATCTTGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAA 12864 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||||| |||||||||| ||||| | || ||||||||| |||||| || | | Sbjct 12863 GAAGATGCCCTCGACGCAGGCGAAGCCGACGAGGCGCTCGGCGAACGACGCAGTGGGGTT 12804 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | |||||| || ||||| | ||||| ||| | |||| || |||||||| Sbjct 12803 GTTGATCCACTTGAGGGCCCAGGCCGCCTTGGTGCGGACCGAAGGCACGGTCTCGATGGC 12744 Query 133131 GTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATA 133190 ||| || | |||| ||||| || | | |||||||||||| ||| ||| || Sbjct 12743 GTTAAAGAGACGGGTCTTCTCGACCTGGTCGGTGATGTAGGTGTCGATCAGGAGCGAGTA 12684 Query 133191 CATTTCCGAGTGTACGTTCTCCAT 133214 | || | ||| | ||||||||| Sbjct 12683 GGTCTCGGCGTGGATGTTCTCCAT 12660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168335957760