Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq30 167 3e-36 seq53 131 2e-25 seq311 96.9 4e-15 >seq30 Length=128594 Score = 167 bits (184), Expect = 3e-36 Identities = 924/1460 (63%), Gaps = 30/1460 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||||||| ||||| ||||||| ||||| ||| ||||| | | | | ||| Sbjct 4159 CCCACAGCACATGCTCATGCGCGTCGCCTGCGGCATCCACTTCAACAACCTGGCCGCTGC 4100 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| |||||| ||||| | | || ||||| |||||| | || || |||| Sbjct 4099 GATCGAGACGTACGACCTCATGTCGCAGAAGTG-GTTCACCCACGCCTCCCCCACGCTCT 4041 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || | || || |||| || ||||| | | | ||||||| Sbjct 4040 TCAACGCCGGCACGTGCATGCCGCAGCTGTCGTCGTGCTTCCTCGTCACCATGAAGGAGG 3981 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGC 111847 | || ||| | ||||| |||| ||| || | | |||| | | ||||| ||| ||| Sbjct 3980 ACTCGATCGAGGGCATCTACGACACGCTTAAG--ACGTGCGCGATGATCTCGAAGCAGGC 3923 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGT 111905 || || || || | | || || ||| | |||| | | ||| || | | || Sbjct 3922 CGGCGGCATTGGCCTCGCGGTTCACGACGTCCGCGCCACC--GGCTCCTACATCCGCGGC 3865 Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 || || || || | || | | || ||||| ||||| || ||| ||| |||||| Sbjct 3864 ACCAACGGCACCTCGAACGGCCTGGTCCCGATGCTGCGCGTGTTCAACAACACGGCGCGC 3805 Query 111966 TATGTAAACCAAGCTGGG---CGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || || |||| | ||| || |||||||| | |||| ||||| || ||||| ||| Sbjct 3804 TACGTCGACCAGGGTGGAGGCCGCCGCAAGGGCGCATTCGCCGTCTACCTGGAGCCGTGG 3745 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||||| || |||||| ||||| || |||| ||||| || ||||||||||| Sbjct 3744 CACGCCGACATCATGTCCTTCCTGGACCTGCGCAAGAACCACGGCTCCGAGGAGGCGCGC 3685 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||||| || |||| || |||||| | || ||||||||| || | || ||| || Sbjct 3684 GCGCGCGACCTTTTCTACGGCCTCTGGGTGTGCGACCTCTTCATGGAGCGCGTGGAGAAG 3625 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | | ||||| |||||||| || || |||| || || || |||| | ||| Sbjct 3624 AACGAGCTCTGGTCGCTCTTTTGCCCGCACGAGGCGCCGGGGCTGGCCGACTCGTGGGGC 3565 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-GACGGT 112261 | || || || || ||||| |||||||| | | | || ||| | || |||| | Sbjct 3564 GCCGACTTCGAGCGGCTGTACACGCAGTACGAGAACCAGGGCCGCGCG-CGGCAGACGAT 3506 Query 112262 GCCAGCTGC-CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | || || || |||||| || | ||| | | || ||||| || || || | Sbjct 3505 -CAAGGCGCGCGCGCTGTGGACGGCCGTGCTCGAAGCGCAGCAGGAGACGGGCACGCCCT 3447 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 | || || ||||| ||||| || |||| ||| || || |||| |||| |||| Sbjct 3446 ACATCCTCTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCAGAACCTGGGCACGATCC 3387 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 | || ||||| || || || ||| | || | || || ||| ||| |||| Sbjct 3386 GCTGCTCGAACCTGTGCACGGAGATCGTCGAGTACACGTCGCCCGACGAGGTGGCCGTGT 3327 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 112500 | |||||||| || ||||| ||| | | || || | || || | || | Sbjct 3326 GCAACCTCGCCTCGATCGCGCTCAACCGCTTCGTCGACGAACGCACGGGCACCTACGACT 3267 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || || || ||| || | ||| ||||| ||| | || || || | Sbjct 3266 TCCAGCGCCTGTTTGAGGTGACGCAAGTCGCCACGCGCAACCTCAACCGCGTCATCGACA 3207 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || | ||||| || || || || | || ||| | ||||| || || || | Sbjct 3206 TCAACCTGTACCCGGTCAAGGAGGCGCGCACGAGCAACATGCGCCACCGCCCCATCGGGC 3147 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACG 112680 |||||||||| || || || || | |||| ||| || | | | || ||||| | Sbjct 3146 TCGGTGTCCAGGGCCTGGCCGACGCGCTCATCCTTATGCGGCTGCCGTACGAGTCCGAGG 3087 Query 112681 AAGCGAAGGAAATCAATGCGCG-TATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 | ||| ||| | || |||| || |||| ||| || || |||||| || |||| Sbjct 3086 AGGCGCAGGCGCTGAA-CCGCGACATCTTTGCGACCATCTACTTCGCCGCGCTGACGGCG 3028 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 | || |||| ||| || || | || || |||| ||| || || || || Sbjct 3027 TCGTGCGACATGGCCGAGCGCGACGGCGCGTACGAGTCCTTCCCGGGCTCGCCGGCCTCG 2968 Query 112800 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAGCT------TCACTAC 112850 | || | ||| || || || ||||||| | ||| || | | | | || Sbjct 2967 CGCGGCGAGCTGCAGTTCGACATGTGGGGCGTGGAGCCCGCGACGGTGGGCGGGCGCTGG 2908 Query 112851 GACTGGGACGCTCTCAAGGAACGCATCAAG-GAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909 ||||||| ||| |||||||| ||||||||| | | ||| || || ||| ||| | | Sbjct 2907 GACTGGGCCGCGCTCAAGGAGCGCATCAAGCGCGTCGGG-CTGCGCAACTCGCTTCTTGT 2849 Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969 ||| || ||||| || ||| ||| | || ||| |||| || || || | || || | Sbjct 2848 GGCGCCCATGCCCACGGCCAGCACGTCGCAGATCCTGGGCAACAACGAGTCGTTCGAGGC 2789 Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 113029 ||||||| ||||| |||| || | | || || || || ||||| ||| |||||| Sbjct 2788 CTACACGTCGAACCTCTACGTGCGGCGCACGCTGGCCGGCGAGTTCGTGTGCGTCAACTC 2729 Query 113030 GCATCTCGTGGATGACCTCA 113049 ||| || || ||||||| Sbjct 2728 GCACCTGCTGCGCGACCTCA 2709 >seq53 Length=108086 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || ||||| ||| ||| || || || || ||||| ||||||||||| || ||| Sbjct 12816 TCGTTCGCCGAGCGCCTCGTCGGCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCC 12875 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||||||||||| || ||||| || ||| |||||||||| Sbjct 12876 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCAAGATGCCCGGACTCACCTTCTCCAAC 12935 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| || |||||||| |||||| Sbjct 12936 GAGCTCATCTCGCGCGACGAGGGCCTCCAC 12965 >seq311 Length=46126 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 176039 CGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCA 176098 |||||||| |||||||| | |||| |||| ||||| ||||| || || | ||||| Sbjct 39982 CGCGTACCGAACTGACCGCTCGGCCACAGAAAGTTGATGTTGTTCGAGCCGACGTAGTTC 40041 Query 176099 TTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTC 176158 | ||||| || || || ||| | | ||| |||||||| ||||||||||| || ||| Sbjct 40042 TGCGCCAGGTTCACGATGGTGCCGGAGAGCGAGACTTCGCCGTGGTGGTAGGCCGAGTTC 40101 Query 176159 TCTGCGACAAATGCCGC-CAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGGAA 176217 || || || | ||||| | |||||| || || ||||| | ||| || | ||| Sbjct 40102 TCGGCAACGTA-GCCGCTGAGCTGCGCGACCTTGATCTCGTTAACGAGGTTGCGCTTGAA 40160 Query 176218 ACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 176259 || ||| | | |||||||| || |||||||| || || Sbjct 40161 GCACGCGAAGAGCACCTTGCGCTGACCGGGCTTGAGGCCGTC 40202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736859874080