Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq30 140 4e-28 seq98 109 6e-19 seq53 93.3 5e-14 >seq30 Length=128594 Score = 140 bits (154), Expect = 4e-28 Identities = 724/1127 (64%), Gaps = 30/1127 (3%) Strand=Plus/Plus Query 109705 AGATGCTTGTTGAC-CACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGT 109763 || ||| |||||| ||| || || || || || || ||||| || | ||||| ||| | Sbjct 2723 AGGTGCGAGTTGACGCAC-ACGAACTCGCCGGCCAGCGTGCGCCGCACGTAGAGGTTCGA 2781 Query 109764 CGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCAT 109823 |||||||| ||||| |||| |||||||| ||||| || | ||| || |||||||| Sbjct 2782 CGTGTAGGCCTCGAACGACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGGGCAT 2841 Query 109824 GGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCG-TCTTTACCCGCTCACGCATTGCGT 109882 ||| |||| ||||| ||| || || ||| || ||| | ||||| | ||| Sbjct 2842 GGGCGCCACAAGAAGCGAGTTGCGCAG-CCCGACGCGCTTGATGCGCTCCTTGAGCGCGG 2900 Query 109883 CCCAATCATAACGACCACTAAATTT---AGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 |||| || | || || | | | | ||| | ||||||| || || || Sbjct 2901 CCCAGTCCCAGCGCCCGCCCACCGTCGCGGGCTCCACGCCCCACATGTCGAACTGCAGCT 2960 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 | || | || || || ||| ||| |||||||| || || |||||||| | Sbjct 2961 CGCCGCGCGAGGCCGGCGAGCCCGGGAAGGACTCGTACGCGCCGTCGCGCTCGGCCATGT 3020 Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059 || | || ||| || || || || || ||| |||| || | |||| | | | Sbjct 3021 CGCACGACGCCGTCAGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGCGGTTCA-GCGCC 3079 Query 110060 -GAGACTCTTCACAGTCGAAGGGAAGACCACA-AAGAATAAACACATCCGCTAGACCCTG 110117 | | ||| || | ||| | || || || || ||| || | | | || || || ||||| Sbjct 3080 TGCGCCTCCTCGGACTCGTACGGCAG-CCGCATAAGGATGAGCGCGTCGGCCAGGCCCTG 3138 Query 110118 AACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGT-CGAGCAGTTTCTACGGGGT 110176 |||||||| || |||||||| || |||||| | ||| || || | || |||| Sbjct 3139 GACACCGAGCCCGATGGGGCGGTGGCGCATGTT-GCTCGTGCGCGCCTCCTTGACCGGGT 3197 Query 110177 AAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTT-CGTGATTTCATGG 110235 | | |||| ||||||||| || ||||| || ||| | | ||| ||| | ||| Sbjct 3198 ACAGGTTGATGTCGATGACGCGGTTGAGGTTGCGCGTGGC-GACTTGCGTCACCTCAAAC 3256 Query 110236 AGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGAC 110295 || | | | ||| | || ||| | | ||| | | ||| || || || Sbjct 3257 AGGCGCTGGAAGTCGTAGGTGCCCGTGCGTTCGTCGACGAAGCGGTTGAGCGCGATCGAG 3316 Query 110296 GCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACA 110353 || || |||||||| | |||||| | || ||||| || | || ||||| |||| Sbjct 3317 GCGAGGTTGCACACGGCCACCTCGTC--GGGCGACGTGTACTCGACGATCTCCGTGCACA 3374 Query 110354 AGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCT 110413 ||| || | || |||| ||||| ||| ||||| ||| |||||| || |||| Sbjct 3375 GGTTCGAGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCCT 3434 Query 110414 TATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACAT 110473 | ||||| ||||| || || || || ||| ||| | | ||| | |||| ||| ||| Sbjct 3435 TGTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCACGGCCGTCC--ACAG 3492 Query 110474 CG-GCG-GCGGGGACAGT-TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGT 110530 || ||| || || || ||| ||| | || | | |||||||| ||||||| Sbjct 3493 CGCGCGCGCCTTGATCGTCTGC-CGCGCGCGGCCCTGGTTCTCGTACTGCGTGTACAGCC 3551 Query 110531 CCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGG 110590 ||| || || || || || | || ||| ||||| || || || ||||| | Sbjct 3552 GCTCGAAGTCGGCGCCCCACGAGTCGGCCAGCCCCGGCGCCTCGTGCGGGCAAAAGAGCG 3611 Query 110591 ACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG-AG 110649 |||| | || ||| || | || |||||| ||||| | ||| | |||| || Sbjct 3612 ACCAGAGCTCGTTCTTCTCCACGCGCTCCATGAAGAGGTCGCACACCCAGA-GGCCGTAG 3670 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 |||||||| || || ||||| || || ||||| ||| || |||| ||| | Sbjct 3671 AAAAGGTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGTTCTTGCGCAGGTCCAGGAAGGAC 3730 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG---ACCC 110766 ||||| || | |||||| || || || ||||| |||| | ||||| || || || Sbjct 3731 ATGATGTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGCCTCCA 3790 Query 110767 GCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGG 110813 |||||| || ||||| || ||| ||||| || | ||||| || Sbjct 3791 CCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGG 3837 >seq98 Length=78734 Score = 109 bits (120), Expect = 6e-19 Identities = 276/412 (67%), Gaps = 17/412 (4%) Strand=Plus/Plus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 ||| ||||| || || ||||| || || || | ||| || || ||||||||||| ||| | Sbjct 1772 ACGGTCGAAGCGGCCGGGGCGCAGAAGGGCCTTATCGAGGATGTCGACACGGTTGGTACC 1831 Query 11562 GGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAGCTG 11618 ||| | || | || | |||| || | ||| |||||||| || || ||||| Sbjct 1832 GGCGAGCACGATAACGT---TCTCCGTGGTCTTGAAGCCGTCCATCTCGACCAGGAGCTG 1888 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGA-ACGCTTCTTAC 11677 | | | ||| || ||||| |||||| | || || ||||| ||||| | Sbjct 1889 GATCAGCGTGGCGTCGCGCTCCTCGTTGCTCG----ACGACTTGCCGCCACGCTGGCGGC 1944 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGG--TTGGCACGTGCCTGTTC 11735 ||| |||||||| || |||||||| | ||| | || | || || | |||| | Sbjct 1945 CGATGGCGTCAATTTCGTCGATGAAGATGATCGAGGGCGCGACTTTGC--GGGCCTCCTT 2002 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||||||||| | || ||||| || ||||| || ||| | | | | Sbjct 2003 GAAGAGATCACGTACACGGCCGCCGCCGACACCGACAAACATGTCGGAGAAATCGGAGCC 2062 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 || | || | ||| || || | |||||| ||||| || ||||||||||||| Sbjct 2063 AGCG-ATGGAGAGGAACGGCACGCCGGCCTCACCGGCGATAGCCTTGGCGAGGAGAGTCT 2121 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 |||| ||||| || | || |||| || ||||| |||||||||||| || Sbjct 2122 TACCGGTACCGGGGGGGCCGACGAGGAGAGCGCCCTTGGGGATCTTGGCGCC 2173 >seq53 Length=108086 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/193 (71%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| ||||| ||||| || Sbjct 12964 TGGAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCTTGCCG 12905 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 12904 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAG 12845 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-----GTCGAGACTTGTCGAACCACTTGAGAG 119682 ||||| ||| || ||||| || || | || | | |||| || ||||||||| | Sbjct 12844 GCGAAGCCGACGAGGCGCTCGGCGAACGACGCAGTGGGG--TTGTTGATCCACTTGAGGG 12787 Query 119683 CCCAGTTGGCCTT 119695 ||||| ||||| Sbjct 12786 CCCAGGCCGCCTT 12774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970743389200