Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq30 176 5e-39 seq53 100 3e-16 >seq30 Length=128594 Score = 176 bits (194), Expect = 5e-39 Identities = 526/805 (65%), Gaps = 9/805 (1%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | || || || |||| ||| || | ||||| |||| |||| ||| Sbjct 3350 GTGTACTCGACGATCTCCGTGCACAGGTTCGAGCAGCGGATCGTGCCCAGGTTCTGCTGG 3409 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||| ||||||||| ||||||||||| ||||||||||| ||||||||| ||| Sbjct 3410 TTCGACTTGCGGTTGCACGCGTCCTTGTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGC 3469 Query 106625 GACTTGAGAATTGCCTTCCACACATCG-GCGGC-TGGTACAATGGCGTTGGCCCGTCCCT 106682 | | ||| | ||| |||||| || ||| | || | || || || || |||| Sbjct 3470 GCTTCGAGCACGGCCGTCCACAGCGCGCGCGCCTTGATCGTCTGCCG--CGCGCGGCCCT 3527 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742 |||||||| ||||| || || || || | ||| || ||||| || || | Sbjct 3528 GGTTCTCGTACTGCGTGTACAGCCGCTCGAAGTCGGCGCCCCACGAGTCGGCCAGCCCCG 3587 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | |||| || || || || || ||||| | | || ||| || |||| |||||| | Sbjct 3588 GCGCCTCGTGCGGGCAAAAGAGCGACCAGAGCTCGTTCTTCTCCACGCGCTCCATGAAGA 3647 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 106862 |||| | ||| ||| | || || || | || ||||| ||| || |||| Sbjct 3648 GGTCGCACACCCAGAGGCCGTAGAAAAGGTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGT 3707 Query 106863 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 | || | || ||||| |||||| || |||||||| ||||| || ||||| |||| Sbjct 3708 TCTTGCGCAGGTCCAGGAAGGACATGATGTCGGCGTGCCACGGCTCCAGGTAGACGGCGA 3767 Query 106923 TAGATCCCTTTCGACG---CCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 106979 | ||||| || || ||| | || | || |||||||| ||| ||| || |||| Sbjct 3768 ATGCGCCCTTGCGGCGGCCTCCACCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGC 3827 Query 106980 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 107039 | ||||| || | | || | || || || || || || || || ||| Sbjct 3828 GCAGCATCGGGACCAGGCCGTTCGAGGTGCCGTTGGTGCCGCGGATGTAGGAGCCGGTGG 3887 Query 107040 CTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACT 107099 | | || || || | | ||||| || || ||| ||| ||||| ||| ||| Sbjct 3888 CGCGGACGTCGTGAACCGCGAGGCCAATGCCGCCGGCCTGCTTCGAGATCATCGCGCACG 3947 Query 107100 CCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC 107159 | |||| || | ||||| || | ||| ||||||||||| ||| || |||||||| Sbjct 3948 TCTTAAGCGTGTCGTAGATGCCCTCGATCGAGTCCTCCTTCATGGTGACGAGGAAGCACG 4007 Query 107160 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219 |||| |||||| | || || || |||||||| || || | ||||| ||||| Sbjct 4008 ACGACAGCTGCGGCATGCACGTGCCGGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC- 4066 Query 107220 TACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 || | || ||||| |||||| ||||| | ||| | | || | ||||||| Sbjct 4067 CACTTCTGCGACATGAGGTCGTACGTCTCGATCGCAGCGGCCAGGTTGTTGAAGTGGATG 4126 Query 107279 CCGATGGCCACACGCATAAACATGT 107303 ||| ||| || ||||| | ||||| Sbjct 4127 CCGCAGGCGACGCGCATGAGCATGT 4151 >seq53 Length=108086 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || || || || || || || |||||| || || ||||| || Sbjct 12965 GTGGAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCTTGCC 12906 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || |||||||||||||| ||||| || || Sbjct 12905 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 12846 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || || | | |||||||||||||| || Sbjct 12845 GGCGAAGCCGACGAGGCGCTCGGCGAACGA 12816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975534421360