Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 138 3e-27 seq681 111 3e-19 seq182 98.7 2e-15 seq651 95.1 3e-14 seq168 86.0 1e-11 >seq3 Length=187283 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||||||||| || | ||||| |||||||| || | || || ||| Sbjct 12513 ACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGCAAGGGTGCGGCCGTCGTCG 12454 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||| || || || ||||| || |||||||| || ||||| || Sbjct 12453 AGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 12394 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| |||| || ||||| ||| || || ||||| |||| ||||| Sbjct 12393 ATCTTCTGCTTGACGGTCTCGATCGTGTCGGAATGGTCGACATCAAGCGTAATAGTCTT 12335 >seq681 Length=11217 Score = 111 bits (122), Expect = 3e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 |||||| ||| |||| ||||||||||| | ||||| ||||||||||| || |||| Sbjct 3196 TCTTTTCGAACGCTGTAGTCGGCAAGAGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAG 3137 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 ||||| || || ||||| || |||||||| || ||| || || || | ||| || || Sbjct 3136 ATAAGGCGCTGCTGGTCCGGGGGAATGCCCTCCGCGTCCTGGATCTTCTACTTAACAGTC 3077 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA-AGTTTTTAC 195128 ||||||||||| || || || ||||||| | |||| || || ||| ||| || || Sbjct 3076 TCAATGGTGTCGGAGTGATCAACAACAAGGGTGATCGTC-TTGTTGGCAAGAGTCTTAAC 3018 Query 195129 GAA 195131 ||| Sbjct 3017 GAA 3015 >seq182 Length=55624 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194964 GTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTG 195023 ||| || || || || | ||||| ||||||||||| || |||||| || || || || Sbjct 55624 GTAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTG 55565 Query 195024 GTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||| || || ||||| || ||||| || || || ||||||||| |||| ||||||||||| Sbjct 55564 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATGGTGTCCGA 55505 Query 195084 ACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||| || | ||||| Sbjct 55504 GTGGTCGACATCAAGAGTGATGGTCTT 55478 >seq651 Length=6762 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||| ||| | || | ||||||| ||||| ||||||||||| | |||| ||| Sbjct 730 ACAAGGTTCAGATTAGATCCATTTTGAACGTTGTAGTCGGCAAGAGTGCGGTCATCCTCG 671 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||| || || | ||| |||||||| || ||||| ||| Sbjct 670 AGCTGCTTGCCCTGGAAGATAAGGCGCTGCTCGTCCACGGGAATGCCCTCCTTGTCCTGA 611 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 || || || || || | | || ||||||| Sbjct 610 ATCTTCTGTTTAACAGTTTTAACGGTGTCC 581 >seq168 Length=58069 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 194964 GTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTG 195023 ||| || || || || | ||||| ||||||||||| || |||||| || || || || Sbjct 1 GTAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTG 60 Query 195024 GTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||| || || ||||| || ||||| || || || ||||| ||| |||| || ||||| || Sbjct 61 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGGTCTCGATCGTGTCGGA 120 Query 195084 ACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || || ||||| | ||||| Sbjct 121 GTGGTCGACATCGAGGGTGATGGTCTT 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109471450323638