Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq30 360 4e-94 seq53 116 7e-21 >seq30 Length=128594 Score = 360 bits (398), Expect = 4e-94 Identities = 1024/1537 (67%), Gaps = 54/1537 (4%) Strand=Plus/Plus Query 212900 CAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGA 212959 |||||| | |||||| | ||| || || | ||| | || | ||| | ||| || Sbjct 2722 CAGGTGCGAGTTGACGCACACGAACTCGCCGGCCAGCGTGCGCCGCACGTAGAGGTTCGA 2781 Query 212960 AGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCAT 213019 ||||||| ||||| ||||||||| ||||| ||||| | |||||||| |||||||| Sbjct 2782 CGTGTAGGCCTCGAACGACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGGGCAT 2841 Query 213020 GGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCC-GATGAGGCGCCGAAGCTCTG 213078 ||| ||||| || || ||| | || ||| | ||| |||| | | ||| | | Sbjct 2842 GGGCGCCACAAGAAGCGAGTTGCGCAGCCCGA-CGCGCTTGATGCGCTCCTTGAGCGCGG 2900 Query 213079 CCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138 |||||||||| | || || | || || |||| ||||||||| ||||||| Sbjct 2901 CCCAGTCCCAGCGCCCGCCCACCGTCGCGGGCTCCACGCCCCACATGTCGAACTGCAGCT 2960 Query 213139 TGCCTTTGCTCACGG--GGCT-GCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCA 213195 ||| || | || ||| |||| || | || ||| | ||| | || ||||| Sbjct 2961 CGCC---GCGCGAGGCCGGCGAGCCCGGGAAGGACTCGTACGCGCCGTCGCGCTCGGCCA 3017 Query 213196 GCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCT 213255 ||||| |||||| ||| || ||| |||||||||| |||| || || | ||| ||| Sbjct 3018 TGTCGCACGACGCCGTCAGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGCGGTTCAGCG 3077 Query 213256 TCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCT 213315 || ||||| |||| | | |||| | ||| | || | | || ||||| |||| Sbjct 3078 CCTGCGCCTCCTCGGACTCGTACGGCAGCCGCATAAGGATGAGCGCGTCGGCCAGGCCCT 3137 Query 213316 GGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGG 213374 |||| |||| |||||||| | ||| | || ||| | || | || ||||| | ||| Sbjct 3138 GGACACCGAGCCCGATGGGGCGGTGGCGCATGTTGCTCGTGCGCGC-CTCCTTGACCGGG 3196 Query 213375 TAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCC 213434 || | |||| |||||||| |||||||||||| ||||| |||| || || | | Sbjct 3197 TACAGGTTGATGTCGATGACGCGGTTGAGGTTGCGCGTGGCGACTTGCGTCACCTCAAAC 3256 Query 213435 AGGTACTCGTGATTGAACACGTAGCC-CCCGTCC-----TGCACAAACTCAGGCAGGGCG 213488 ||| || | || ||||| ||||| | | || || || ||| Sbjct 3257 AGGCGCTGG------AAGTCGTAGGTGCCCGTGCGTTCGTCGACGAAGCGGTTGAGCGCG 3310 Query 213489 ATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGT 213547 || ||| |||||||| ||||||||||| | | | | | |||||||| | |||||| || Sbjct 3311 ATCGAGGCGAGGTTGCACACGGCCACCTCGTCGGGCGAC-GTGTACTCGACGATCTCCGT 3369 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-G 213606 ||||||||| ||| ||||| |||||||||||||| ||||| ||||| ||| | ||| | Sbjct 3370 GCACAGGTTCGAGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTT-GCGGTTGCACG 3428 Query 213607 AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC-TC 213665 ||||||||||| |||||||| | || ||||| |||| | | || | | | | || Sbjct 3429 CGTCCTTGTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCA-CGGCCGTC 3487 Query 213666 CAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC-CGGGCGTAGC-CTCGTACTGTT 213723 || || | ||||||| | | ||| || | ||| | | | ||||||||| Sbjct 3488 CACAGCGCGCGCGCCTTGATCGTCTGCC-----GCGCGCGGCCCTGGTTCTCGTACTGCG 3542 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCA-GACCCTGTCCAGTCCCGGA-CAGGATGCGGG 213781 ||| ||| | ||| ||| |||||| || | | |||| ||||| | |||||| Sbjct 3543 TGTACAGCCGCTCGAAGTCGGCGCCCCACGAGTCGG-CCAGCCCCGGCGCCTCGTGCGGG 3601 Query 213782 ACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCC 213840 || | ||| |||| | ||| | |||| || | || |||||| ||||| |||| Sbjct 3602 -CAAAAGAGCGACCAGAGCTCGTTCTTCTCC-ACGCGCTCCATGAAGAGGTCGCACACCC 3659 Query 213841 ACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGAT 213900 | || || ||| ||||| | | | | ||| || || ||| |||||||| | Sbjct 3660 AGAGGCCGTAGAAAAGGTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGTTCTTGCGCAGGT 3719 Query 213901 CTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCC----C 213956 | || ||| | |||||| |||||||||||||||| ||||| ||| || ||||| | Sbjct 3720 CCAGGAAGGACATGATGTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGC 3779 Query 213957 GGCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGT 214016 ||| | | || |||||||| || | ||| ||||||| | |||||| | || Sbjct 3780 GGCGGCCT-CCACCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGG 3838 Query 214017 ACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTG 214076 ||||| ||||| || |||||||| || || || ||||||| ||| | | || | Sbjct 3839 ACCAGGCCGTTCGAGGTGCCGTTGGTGCCGCGGATGTAGGAGCCGGTGGCGCGGACGTCG 3898 Query 214077 CTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTC 214136 | | ||| || ||||| ||||| | ||| |||||||| ||||| | | | || Sbjct 3899 TGAACCGCGAGGCCAATGCCGCCGGCCTGCTTCGAGATCATCGCGCACGTCTTAAGCGTG 3958 Query 214137 TCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGG 214196 || |||||| | || ||| || | | | | | | |||||| ||| ||||| Sbjct 3959 TCGTAGATGCCCTCGATCGAGTCCTCCTTCATGGTGACGAGGAAGCACGACGACAGCTGC 4018 Query 214197 GGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAG 214256 ||| || ||| ||| | |||||| ||||||||| ||| ||| | | |||| | || Sbjct 4019 GGCATGCACGTGCCGGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTGCGAC 4078 Query 214257 AGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGAT-CTGTAGAGCGCA 214315 | ||| ||| ||||| | | | || | || || |||||| | | || ||| Sbjct 4079 ATGAGGTCGTACGTCTCGATCGCAGCGGCCAGGTTGTTGAAGTGGATGCCGCAG-GCGAC 4137 Query 214316 CCTCATCAGCATGTGCTG-GGGC-CTC-TCTATGGGTCCTTTGGGGCCCTTGAGCAGGTA 214372 | ||| ||||||||||| |||| ||| | || | || | || |||||||||||| Sbjct 4138 GCGCATGAGCATGTGCTGTGGGCGCTCGACGATCTGGCC---GTGGAGCTTGAGCAGGTA 4194 Query 214373 GGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAG 214409 |||||||| || |||||||| || |||||| |||| Sbjct 4195 CGAGCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTAG 4231 >seq53 Length=108086 Score = 116 bits (128), Expect = 7e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 48104 TTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGG 48163 ||| || || || ||| ||||||| |||||| ||||| |||| | ||| ||||| || Sbjct 13006 TTGTGCTGGAGCATGGAGTAGAGCAGGCAGGCGAAGTCGGTGTGGAGGCCCTCGTCGCGC 12947 Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 ||||||| ||||||||||| ||| || ||||| || | || ||||||||||| Sbjct 12946 GAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCTTGCCGCGCTTCTTGAGCCAGAAG 12887 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTC 48283 || || ||| ||||| ||||||||||||||||| || ||||| || ||| | | Sbjct 12886 ATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGCCGACGAGGCGC 12827 Query 48284 TCTCCGAAAGAAGC 48297 || |||| || || Sbjct 12826 TCGGCGAACGACGC 12813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524486069760