Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq30 215 1e-50 seq53 149 1e-30 >seq30 Length=128594 Score = 215 bits (238), Expect = 1e-50 Identities = 967/1526 (63%), Gaps = 51/1526 (3%) Strand=Plus/Plus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||| ||||| || ||| | | |||| ||||||||||||||||||||| | |||||| Sbjct 2770 GTAGAGGTTCGACGTGTAGGCCTCGAACGACTCGTTGTTGCCCAGGATCTGCGACGTGCT 2829 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTT 221274 ||| ||||||||||| ||||| || || ||||||||| |||| | |||||| || Sbjct 2830 GGCCGTGGGCATGGGCGCCACAAGAAGCGAGTTGCGCAGCCCGACGCGCTTGATGCGCTC 2889 Query 221275 TCTCAGCGTGTTCCAGTCACAGTGTCCTCCCAG-GTCNNNNNNNNNNNNNNNNNNNNNNN 221333 | |||| | |||||| ||| | || |||| ||| Sbjct 2890 CTTGAGCGCGGCCCAGTCCCAGCGCCCGCCCACCGTCGCGGGCTCCACGCCCCACATGTC 2949 Query 221334 NNNNNNNNNNNNNNNNNTTAGACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACA 221393 || |||| || | | |||||||| | |||| Sbjct 2950 GAACTGCAGCTCGCCGCGC-GAGGCCGGCGAGCCCGGGAAGGACTCGTACGCGCCGTCGC 3008 Query 221394 GTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCT 221453 | |||||| | |||| ||| |||||| || ||| |||||||||| ||||||| Sbjct 3009 GCTCGGCCATGTCGCACGACGCCGTCAGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGC 3068 Query 221454 TGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGA---CGT 221510 ||| || || ||||| || | | |||| || |||| | | || ||| Sbjct 3069 GGTTCAGCGCCTGCGCCTCCTCGGACTCGTACGGCA---GCCGCATAAGGATGAGCGCGT 3125 Query 221511 CGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTT 221570 ||||||| ||||| || |||| |||||||| | ||| | | ||||| | | ||| | Sbjct 3126 CGGCCAGGCCCTGGACACCGAGCCCGATGGGGCGGTGGCGCATGTTGCTCGTGCGCGCCT 3185 Query 221571 CTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAA 221630 | || || || | ||||| |||||| | ||||||||| | ||| ||||| Sbjct 3186 CCTTGACCGGGTACAGGTTGATGTCGATGACGCGGTTGAGGTTGCGCGTGGCGACTTGCG 3245 Query 221631 CCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCA 221690 |||||| ||| |||| | | | | ||| |||| |||| Sbjct 3246 TCACCTCAAACAGGCGCTGGAAGTCGTA---------GGTGCC--CGTGC----GTTCGT 3290 Query 221691 CAA--AAGCGTTT-AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGG 221747 | | ||||| || || || | ||| ||||| ||||||||||||||||| | Sbjct 3291 CGACGAAGCGGTTGAGCGCGATCGAGGCGAGGTTGCACACGGCCACCTCGTCGGGCGACG 3350 Query 221748 TATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGAT 221807 | |||| | |||||| || || ||||| ||| ||| || ||||||| | || | Sbjct 3351 TGTACTCGACGATCTCCGTGCACAGGTTCGAGCAGCGGATCGTGCCCAGGTTCTGCTGGT 3410 Query 221808 TAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 | |||||||| ||| |||||||||||||| || |||| ||| |||||| |||| | Sbjct 3411 TCGACTTGCGGTTGCACGCGTCCTTGTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCG 3470 Query 221868 CCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACC-CTC 221925 | | || | | || || | | | |||| | || | || | |||| | | | Sbjct 3471 CTTCGAGCAC---GGCC----GTCCACAGCGCGCGCGCCTTGATCGT--CTGCCGCGCGC 3521 Query 221926 GGTC----TTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCA 221981 || | || || ||| || || ||| || || | | || ||| ||| ||| Sbjct 3522 GGCCCTGGTTCTCGTACTGCGTGTACAGCCGCTCGAAGTCGGCGCCCCACGAGTCGGCCA 3581 Query 221982 GGCCTGGACACCTGGCG-GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGC 222040 | || || | ||| | | || || | || |||| ||| ||| | | || | || | Sbjct 3582 GCCCCGG-CGCCTCGTGCGGGCAAAAGAGCGACCAGAGCTCGTTCTTCTCCACGCGCTCC 3640 Query 222041 ATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACG 222100 ||||||||||| | ||| || | | || || || | | ||| |||||| | Sbjct 3641 ATGAAGAGGTCGCACACCCAGAGGCCGTAGAAAAGGTCGCGCGCGCGCGCCTCCTCGGAG 3700 Query 222101 CCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAG 222160 |||| ||| || | ||| |||| || | ||||| ||||||||||||||||| ||| Sbjct 3701 CCGTGGTTCTTGCGCAGGTCCAGGAAGGACATGATGTCGGCGTGCCACGGCTCCAGGTAG 3760 Query 222161 ACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTG 222220 ||||| | ||||| || | |||||||| || || | | || |||| Sbjct 3761 ACGGCGAATGCGCCCTTGCGGCGGCCTCCACCCTGGTCGACGTAGCGCGCCGTGTTGTTG 3820 Query 222221 AAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCA 222280 || | ||| || |||| ||||| ||||| || ||||||||||| ||||| | Sbjct 3821 AACACGCGCAGCATCGGGACCAGGCCGTTCGAGGTGCCGTTGGTGCCGCGGATGTAGGAG 3880 Query 222281 CCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATG 222340 ||| ||| | | || | | | ||| || || ||||| || ||||||||||| Sbjct 3881 CCGGTGGCGCGGACGTCGTGAACCGCGAGGCCAATGCCGCCGGCCTGCTTCGAGATCATC 3940 Query 222341 GCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGA 222400 ||||| |||| || ||||| ||||||||| || ||||||||||| | | | | || Sbjct 3941 GCGCACGTCTTAAGCGTGTCGTAGATGCCCTCGATCGAGTCCTCCTTCATGGTGACGAGG 4000 Query 222401 AAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGT 222460 || || ||||||| ||| | || | | |||||| || |||||||| |||||| Sbjct 4001 AAGCACGACGACAGCTGCGGCATGCACGTGCCGGCGTTGAAGAGCGTGGGGGAGGCGTGG 4060 Query 222461 GTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCG 222520 || || | | ||||| || ||||||||||| | | ||| | ||||| | Sbjct 4061 GTGAACCACTTCTGCGACATGAGGTCGTACGTCTCGATCGCAGCGGCCAGGTTGTTGAAG 4120 Query 222521 TGAAT-CTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTT 222576 || || | ||| |||| | |||| ||||| ||| || | ||| || | | || | Sbjct 4121 TGGATGCCGCA-GGCGACGCGCATGAGCATGTGCTGTGGGCGCTCGAC-GATCTGGCCGT 4178 Query 222577 GGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAA 222636 |||||| |||||||||||| || || |||||||| || ||||||| | | | || Sbjct 4179 GGAGCT--TGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTAGCCGAA 4236 Query 222637 GTCTCTGCCGTGAACCACGGCGGCGT 222662 ||| | | || || | ||| |||| Sbjct 4237 GTCGCGGTTGTAGACGATGGCCGCGT 4262 >seq53 Length=108086 Score = 149 bits (164), Expect = 1e-30 Identities = 167/218 (77%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTG 25884 |||||| |||||| | ||||||||||||| || | || |||| | |||||| || Sbjct 12774 AAGGCGGCCTGGGCCCTCAAGTGGATCAACAACCCCACTGCGTCGTTCGCCGAGCGCCTC 12833 Query 25885 GTAGCCTTTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCT 25942 || | ||| | |||| || ||||||||||| ||| ||| || || ||| |||||||||| Sbjct 12834 GTCGGCTTCGCCTGC-GTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC-GCCATCTTCT 12891 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||||||| || || | |||||||| || ||| ||||||||||||||| | | Sbjct 12892 GGCTCAAGAAGCGCGGCAAGATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCGCGCG 12951 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||||||| ||||||| || || ||||||||||||||| Sbjct 12952 ACGAGGGCCTCCACACCGACTTCGCCTGCCTGCTCTAC 12989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928836510060160