Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq30 159 4e-34 seq53 100 3e-16 >seq30 Length=128594 Score = 159 bits (176), Expect = 4e-34 Identities = 526/812 (65%), Gaps = 7/812 (1%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||||||| ||||| ||||||| ||||| |||||||||| | || | | ||| Sbjct 4159 CCCACAGCACATGCTCATGCGCGTCGCCTGCGGCATCCACTTCAACAACCTGGCCGCTGC 4100 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||| |||||| ||||| || | || ||||| ||||| | || || |||| Sbjct 4099 GATCGAGACGTACGACCTCATGTCGCAGAAGTG-GTTCACCCACGCCTCCCCCACGCTCT 4041 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || || | |||||| |||| |||||||| || ||| ||||||| Sbjct 4040 TCAACGCCGGCACGTGCATGCCGCAGCTGTCGTCGTGCTTCCTCGTCACCATGAAGGAGG 3981 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 |||| ||| | || ||||| | || |||| | ||| ||| ||||| ||| ||| | Sbjct 3980 ACTCGATCGAGGGCATCTACGACACGCTTAAGACGTGCGCGATGATCTCGAAGCAGGCCG 3921 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | || ||||| | | || || || | |||| || || || || || | Sbjct 3920 GCGGCATTGGCCTCGCGGTTCACGACGTCCGCGCCACCGGCTCCTACATCCGCGGCACCA 3861 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || | | || ||||| ||||| || ||| ||| |||||||| | Sbjct 3860 ACGGCACCTCGAACGGCCTGGTCCCGATGCTGCGCGTGTTCAACAACACGGCGCGCTACG 3801 Query 75570 TAAATCA---AGCGGGGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | || || |||||||| | |||| |||||| |||| || ||||| | Sbjct 3800 TCGACCAGGGTGGAGGCCGCCGCAAGGGCGCATTCGCCGTCTACCTGGAGCCGTGGCACG 3741 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| |||||| ||||| || | || ||||| || ||| ||||| || Sbjct 3740 CCGACATCATGTCCTTCCTGGACCTGCGCAAGAACCACGGCTCCGAGGAGGCGCGCGCGC 3681 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | || || || | ||| ||| | ||||| |||||| |||| || ||| || | Sbjct 3680 GCGACCTTTTCTACGGCCTCTGGGTGTGCGACCTCTTCATGGAGCGCGTGGAGAAGAACG 3621 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGG 75806 | ||||| || || || || || |||| || || || ||||| || ||| | | Sbjct 3620 AGCTCTGGTCGCTCTTTTGCCCGCACGAGGCGCCGGGGCTGGCCGACTCGTGGGGCGCCG 3561 Query 75807 AGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAG 75866 | || || || ||||| |||| || | |||| | || ||| | | || Sbjct 3560 ACTTCGAGCGGCTGTACACGCAGTACGAGAACCAGGGCCGCGCGCGGCAGAC-GATCAAG 3502 Query 75867 CCGC-CGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATG 75925 ||| || | |||| ||| | ||| || | ||| |||||| || || || || || Sbjct 3501 GCGCGCGCGCTGTGGACGGCCGTGCTCGAAGCGCAGCAGGAGACGGGCACGCCCTACATC 3442 Query 75926 CTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGC 75985 || |||||||| || || ||| ||| ||||| |||| |||| || ||| || Sbjct 3441 CTCTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCAGAACCTGGGCACGATCCGCTGC 3382 Query 75986 TCAAATCTTTGCACGGAAATTTTAGAGTACAC 76017 || || || |||||||| || | |||||||| Sbjct 3381 TCGAACCTGTGCACGGAGATCGTCGAGTACAC 3350 >seq53 Length=108086 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || |||||||||||||| | | || || || || ||||| |||||||||||||| || Sbjct 12816 TCGTTCGCCGAGCGCCTCGTCGGCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCC 12875 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | ||| | |||||||| || ||||| || || |||||| || Sbjct 12876 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCAAGATGCCCGGACTCACCTTCTCCAAC 12935 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || || || || ||||| |||||| Sbjct 12936 GAGCTCATCTCGCGCGACGAGGGCCTCCAC 12965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564275616320