Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq146 150 2e-31 seq98 104 3e-17 seq168 86.0 8e-12 >seq146 Length=62863 Score = 150 bits (166), Expect = 2e-31 Identities = 455/690 (66%), Gaps = 17/690 (2%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGT-ATG-GCAAAATGATCGTGTAG 195362 |||||||| | || || || ||||| || || || || ||| |||| | | || || | Sbjct 62120 GGTATCGACCTCGGTACCACGTACTCGTGCGTCGGCGTGATGCGCAACA--ACCGCGTTG 62177 Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 | || ||| | || ||||| || ||||| || || || || ||||| ||||| || || | Sbjct 62178 AAATCATCGCCAACGACCAGGGTAACCGCACCACCCCTTCCTACGTCGCCTTCACTGAGA 62237 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 ||| ||||||||||| || || || || || ||| | || |||||||||| || ||| Sbjct 62238 CTGAGCGTCTCGTTGGTGAGGCTGCCAAGAACCAGGCTGCCATGAACCCTAAGAACACTA 62297 Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGAT--AAGAAAGTCCAAGACGA 195540 |||| || || ||||| | || || || || |||| | ||| | |||| ||| Sbjct 62298 TCTTCGATGCTAAGCGCATGATCGGCCGTGAG--TTCGACTCCAAGGAGATCCAGAGCGA 62355 Query 195541 TATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGT 195600 || ||| |||| | | | || |||| || |||| | ||||| | | || Sbjct 62356 CATGAAGCTCTGGCCCTTCAAGGTCGTTCGCG--ATGGC-AAGAAGCCCGCCGTCGAGGT 62412 Query 195601 TGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGAT 195660 ||| ||| | || ||| | || ||||| || || || | ||| | | | Sbjct 62413 TGAGTTTAAGGGCCAGACCCAGGTCTTCAAGCCCGAGGAGATCTCCGCCATGATCCTCAC 62472 Query 195661 TAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720 |||||||||| ||| || ||| | || | | || || | || || || || Sbjct 62473 CAAGATGAAGGGTGTTGCCGAGGAGTTCCTTGGCGAGCCCGTCAAGAACGCCGTCGTCAC 62532 Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 || || || ||||||| ||||| || || ||||| || |||||||| | | ||| | Sbjct 62533 CGTCCCCGCCTACTTCAACGATTCCCAGCGTCAGGCTACCAAGGACGCCGGCACCATTTC 62592 Query 195781 GGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTC 195839 || || || ||| | | || ||||| || || || || || || || || || || | Sbjct 62593 CGGCCTCAA-TGTCCAGCGTATCATCAACGAGCCCACCGCCGCCGCTATCGCGTACGGCC 62651 Query 195840 TGGACAAG--AACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 | |||||| | | ||| || | || || | ||||| || |||||||| || || Sbjct 62652 TCGACAAGGCTTCCAAGAC--CGAGCAGAACGTCCTCATCTTCGACCTCGGTGGCGGCAC 62709 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 || || ||||| || ||| || || ||| | ||||| || ||| | || || || Sbjct 62710 CTTCGACGTCTCCCTCCTCTCCATCGACTCCGGTGTGTTCGAGGTCAAGTCCACCGCCGG 62769 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||| || || || ||||| || || ||||| Sbjct 62770 TGACACCCACCTCGGTGGCGAGGACTTCGA 62799 >seq98 Length=78734 Score = 104 bits (114), Expect = 3e-17 Identities = 333/507 (66%), Gaps = 15/507 (3%) Strand=Plus/Minus Query 198444 ACGCGATTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTT 198503 || || |||| || || | ||| |||| ||| |||| |||| || |||| ||||| Sbjct 2269 ACACGCTTCACAGACGTCGCCGGTGTCGAAGAAGCCAAGGCTGAGATCATGGAGTTTGTT 2210 Query 198504 GATTTTCTTAAAAACCCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCT 198563 |||||||| ||||||| |||||| | | || ||| ||||| || ||| Sbjct 2209 GATTTTCTCCGCAACCCCGCTAAGTACCACAAACTCGGCGCCAAGATCCCCAAGGGCGCT 2150 Query 198564 CTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAA 198623 || |||| ||| |||| ||||| ||||| || || || || |||||||| ||||| Sbjct 2149 CTCCTCGTCGGCCCCCCCGGTACCGGTAAGACTCTCCTCGCCAAGGCTATCGCCGGTGAG 2090 Query 198624 TCGAGTGTCCCCTT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTG 198681 | | || || || ||| || ||| || ||| |||| ||| ||||| || |||| Sbjct 2089 GCCGGCGTGCCGTTCCTCTCCATCGCT-GGCTCCGA-TTTCTCCGACATGTTTGTCGGTG 2032 Query 198682 TTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATC-AACCATGTATC 198740 | || | || || || || ||||| || | || || ||| || || | ||| Sbjct 2031 TCGGCGGCGGCCGTGTACGTGATCTCTTCAAGGAGGCCCG-CAAAGTCGCGCCCTCGATC 1973 Query 198741 ATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGGTGGAACTACTACACCTGGT 198800 |||||||| || || |||||||| | || ||||||| || | | | | | | Sbjct 1972 ATCTTCATCGACGAAATTGACGCCATCGGCCGCCAGCGTGGCGG--CAAGT-CGTCGAGC 1916 Query 198801 AATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTTTGA---C 198857 || || ||||| || ||| | | |||||| || |||||||| || || | | Sbjct 1915 AACGAGGAGCGCGACGCCACGCTGATCCAGCTCCTGGTCGAGATGGACGGCTTCAAGACC 1856 Query 198858 AATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAGGATTGATATCCTAGATGATGCA 198917 | |||| | |||| ||| | || | ||| || | | || ||||| ||| | || Sbjct 1855 ACGGAGAACGTTATC---GTGCTCGCCGGTACCAACCGTGTCGACATCCTCGATAAGGCC 1799 Query 198918 CTGCTTCGTCCCGGTCGATTCGACCGT 198944 || || || ||||| || ||||||||| Sbjct 1798 CTTCTGCGCCCCGGCCGCTTCGACCGT 1772 >seq168 Length=58069 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || || | || || ||||||||||| || || || Sbjct 177 ATGCAGATCTTCGTGAAGACGCTCGCCAACAAGACCATCACCCTCGATGTCGACCACTCC 118 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 117 GACACGATCGAGACCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 58 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTAC 172038 || || || || || || || ||||| || ||||| || |||||||| || ||| Sbjct 57 CAGCGTCTCATCTTCCAGGGCAAGCAGCTCGATGATGGCCGCACCCTCGCGGACTAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657856528578080