Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3 107 1e-18 seq182 95.1 8e-15 seq168 91.5 1e-13 >seq3 Length=187283 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 ||| || | ||| | || || ||||||| ||| ||| ||||| | ||| ||||| | Sbjct 12532 TCCACCGCGCAAACGAAGTACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGC 12473 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| |||| | ||||| || ||||| || |||||| || || |||||||| | || Sbjct 12472 AAGGGTGCGGCCGTCGTCGAGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGGTCCGGGGG 12413 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC--ATTGGCCTCG 34927 | ||||||||||| | || || || ||||||| | |||| || | ||| ||| Sbjct 12412 AATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATCGTGTCGGAATGG--TCG 12355 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || || ||||| | ||||||||| || || |||||||| Sbjct 12354 ACATCAAGCGTAATAGTCTTGTTAGCGAGGGTCTTGACGAAAATCTGCAT 12305 >seq182 Length=55624 Score = 95.1 bits (104), Expect = 8e-15 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 ||||||| ||| |||| |||| || || ||||| || |||||| || || |||||| Sbjct 55623 TAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTGG 55564 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC--AT 34919 || | || | ||||||||||| | || || || ||||||| | || | || | Sbjct 55563 TCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATGGTGTCCGAG 55504 Query 34920 TGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||||||||| || |||||||| || ||||||||| || || |||||||| Sbjct 55503 TGG--TCGACATCAAGAGTGATGGTCTTGTTCGCGAGGGTCTTCACGAAAATCTGCAT 55448 >seq168 Length=58069 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 ||||||| ||| |||| |||| || || ||||| || |||||| || || |||||| Sbjct 2 TAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTGG 61 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC--AT 34919 || | || | ||||||||||| | || || || || |||| | |||| || | Sbjct 62 TCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGGTCTCGATCGTGTCGGAG 121 Query 34920 TGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||||||| | ||| |||||||| | ||| ||||| || ||||||||||| Sbjct 122 TGG--TCGACATCGAGGGTGATGGTCTTGTTGGCGAGCGTCTTCACGAAGATCTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689965861966