Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq30 284 1e-71 seq53 82.4 7e-11 >seq30 Length=128594 Score = 284 bits (314), Expect = 1e-71 Identities = 969/1492 (65%), Gaps = 40/1492 (3%) Strand=Plus/Plus Query 146944 GTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATG 147003 ||| | | ||| || ||||| || ||||| | || || | |||| | || || |||||| Sbjct 2783 GTGTAGGCCTCGAACGACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGGGCATG 2842 Query 147004 TACGCCACCAACAATGAATTTCGCAGACCGTACGCACG-GATGTTGTCCTTCAAAGTTTG 147062 |||||| | | || || ||||| ||| |||| | |||| ||||| | | Sbjct 2843 GGCGCCACAAGAAGCGAGTTGCGCAGCCCG-ACGCGCTTGATGCGCTCCTTGAGCGCGGC 2901 Query 147063 CCAGTCCCA---------CATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCAC 147113 ||||||||| || || || |||| |||| |||||||||| |||| ||| | Sbjct 2902 CCAGTCCCAGCGCCCGCCCACCGTCGCGGGCTCCACGCCCCACATGTCGAACTGCAGCTC 2961 Query 147114 TCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTC 147173 || || ||| || ||| | ||| | ||| |||||||||| |||| || Sbjct 2962 GCCGCGCGAGGCCGGCGAGCCCGGGAAGGACTCGTACGCGCCGTCGCGCTCGGCCATGTC 3021 Query 147174 ACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGT 147233 || ||| ||||| | |||| ||||| | ||| | ||| || | Sbjct 3022 GCACGACGCCGTCAGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGCGGTTCAGCGCCTG 3081 Query 147234 CGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGAT 147293 ||| || ||| |||||| |||| |||| ||| | | || ||||||| ||||||| Sbjct 3082 CGCCTCCTCGGACTCGTACGGCAGCCGCATAAGGATGAGCGCGTCGGCCAGGCCCTGGAC 3141 Query 147294 ACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAG 147351 ||||| ||||| || || || |||||| || | ||||| || | || || Sbjct 3142 ACCGAGCCCGATGGGGCGGTGGCGCATGTTGCT-CG-TGCGCGCCTCCTTGACCGGGTAC 3199 Query 147352 TGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGT 147411 ||||| || || | ||||||||| ||| | |||| || | || Sbjct 3200 AGGTTGATGTCGATGACGCGGTTGAGGTTGCGCGTGGCGACTTGCGTCACCTCAAACAGG 3259 Query 147412 TTCTCGAAATCATAAGT-CCCGTC--TTCGACACGTACGCATTGGTTCACGGCGATAGAC 147468 || ||| || || || ||||| |||| | ||| | |||| | ||||| || Sbjct 3260 CGCTGGAAGTCGTAGGTGCCCGTGCGTTCGTCG---ACGAAGCGGTTGAGCGCGATCGAG 3316 Query 147469 GCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCACAG 147527 || || ||||| |||||| ||| |||| || || |||||| ||||| || | |||||| Sbjct 3317 GCGAGGTTGCACACGGCCACCTCGTCGGGCGACG-TGTACTCGACGATCTCCGTGCACAG 3375 Query 147528 GTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTT 147587 ||| ||| || |||| || ||||| || || || ||||||||||| || Sbjct 3376 GTTCGAGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCCTT 3435 Query 147588 GAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTC 147647 | |||| ||||| || ||| ||||| |||| ||| | | | | ||| | Sbjct 3436 GTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCACGGCCGTCCACAGCGC 3495 Query 147648 CTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTC 147707 |||| | | |||||| |||||||| ||| |||||| || ||||| |||||| Sbjct 3496 GCGCGCCTTGATCGTCTGCCGCGCGCGGCCCTGGTTCTCGTACTGCGTGTACAGCCGCTC 3555 Query 147708 AAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCA 147767 || ||| |||| | | ||||| || || || || ||||| || | |||||||| Sbjct 3556 GAAGTCGGCGCCCCACGAGTCGGCCAGCCCCGGCGCCTCGTGCGGGCAAAAGAGCGACCA 3615 Query 147768 CATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAG 147827 | |||| | | ||||| ||| || || || |||||| || |||| | ||| Sbjct 3616 GAGCTCGTTCTTCTCCACGCGCTCCATGAAGAGGTCGCACACCCAGAGGCCGTAGAAAAG 3675 Query 147828 ATCGCGCGCTTTGCAATCCTCGGCGCCCATGTT---GCGTTTCAAATTAAGCACGCTATA 147884 |||||||| ||||||| ||| ||| ||| || | || | | Sbjct 3676 GTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGTTCTTGCG---CAGGTCCAGGAAGGACAT 3732 Query 147885 GATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCC 147941 ||||||||||||||| || || | ||||||||| | || || || || ||| || Sbjct 3733 GATGTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGCCTCCACC 3792 Query 147942 CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGC 148001 ||||||||| | |||| || ||||||| |||||||||| ||| || |||||||| ||| Sbjct 3793 CTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGACCAGGCCGTTCGA 3852 Query 148002 AGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCC 148061 |||||||||||| ||| | | |||| ||| || || ||||| || | ||| Sbjct 3853 GGTGCCGTTGGTGCCGCGGATGTAGGAGCCGGTGGCGCGGACGTCGTGAACCGCGAGGCC 3912 Query 148062 AATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGT---GTAGATGCC 148118 |||||||||| | | ||| || || || ||| || | | | ||| ||||||||| Sbjct 3913 AATGCCGCCGGCCTGCTTCGAGAT--CATCGCGCACGTCTTAAG-CGTGTCGTAGATGCC 3969 Query 148119 GTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGT 148178 ||||| ||| | || | | | | || ||||| ||| ||||| || | ||| Sbjct 3970 CTCGATCGAGTCCTCCTTCATGGTGACGAGGAAGCACGACGACAGCTGCGGCATGCACGT 4029 Query 148179 TCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATA 148238 || || ||| || ||||| ||||| || ||| | || || ||| | | || Sbjct 4030 GCCGGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTGCGACATGAGGTCGTA 4089 Query 148239 CGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCC-CAGCGCGACGCGCATGAGCA 148297 |||||| || || | | | || || | ||| ||||| ||| |||||||||||||||| Sbjct 4090 CGTCTCGATCGCAGCGGCCAGGTTGTTGAAGTGGATGCCGCAG-GCGACGCGCATGAGCA 4148 Query 148298 TGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGG 148357 |||||||||| || ||| | | || || || |||||| || || ||||| | Sbjct 4149 TGTGCTGTGGGCGCTCGACGATCTGGCCGTGGAGCTTGAGCAGGTACGAGCGCTCGAGCG 4208 Query 148358 TTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCGC 148409 | ||| | || ||||| | ||| | || || | | ||| |||||||||| Sbjct 4209 TCTTGAAGCCGAAGTAGTCGTAGCCGAAGTCGCGGTTGTAGACGATGGCCGC 4260 >seq53 Length=108086 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 46750 TCGAGCACGTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCG 46809 ||||| |||||| | || |||| ||||| |||||| | ||||||||| | | | Sbjct 12748 TCGAGACCGTGCCTTCGGTCCGCACCAAGGCGGCCTGGGCCCTCAAGTGGATCAACAACC 12807 Query 46810 AGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGttttttt 46869 || || || | ||||||||| | || | ||||| ||||| ||| | || || | Sbjct 12808 CCACTGCGTCGTTCGCCGAGCGCCTCGTCGGCTTCGCCTGCGTCGAGGGCATCTTCTTCT 12867 Query 46870 CGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGT 46929 | ||| || |||||| || | | || | |||| ||||| || || || | Sbjct 12868 CCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCAAGATGCCCGGACTCACCT 12927 Query 46930 TCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 || |||||| | |||||||||||||| || || ||||| ||||| || || || Sbjct 12928 TCTCCAACGAGCTCATCTCGCGCGACGAGGGCCTCCACACCGACTTCGCCTGCCT 12982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476606946245040