Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq429 221 1e-52 >seq429 Length=23534 Score = 221 bits (244), Expect = 1e-52 Identities = 367/528 (70%), Gaps = 8/528 (2%) Strand=Plus/Minus Query 146806 GGGTGGTAGCCCTCGAGGGCAAAATCTTCTGCCCTGAAATCGTCTATGTCCT------CC 146859 |||| ||||||||||| | || || || | | ||| ||||| || |||| || Sbjct 6690 GGGTTGTAGCCCTCGATCTCGAAGTCCTCGGAGCGGAAGTCGTCGATCTCCTTGATGTCC 6631 Query 146860 ACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTC 146919 | ||| | | ||||||||| ||||||||| || || | | |||||| | Sbjct 6630 TCGCGCGGCGAGATCTTGAGCGTGGGGAAGGCGCGCGGCACGCGGCGCAGCTGCTCGGCC 6571 Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||| |||||||||| ||| ||||||||||| || | | |||||| | ||| || Sbjct 6570 AGCGGCCCCACGTGGTTCGAGTACACGTGCGCGTCGCCGATGCAGTGCACCAGGTCGCCA 6511 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 ||| | || ||| | |||| |||| | || ||||||| |||| || |||||| Sbjct 6510 GGCCGCAAATTCGTGACGCGAGCCAGCATGCACGTCAGCAGCGCGTAGGACGCGATGTTG 6451 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 ||||| || ||||| ||||| || | | |||||| ||| ||||||||||||| ||| Sbjct 6450 AAGGGCACGCCCAGCCCCATATCGGCGCTGCGCTGGTAGAGCAGGCACGAGAGCTCGCCG 6391 Query 147100 TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 || | ||||| ||||| | || | ||||||||| ||||||||||| | ||||||| Sbjct 6390 TCCGAGACGTAGAACTGCGAGAGCACGTGGCACGGTGGCAGCGCCATCTTGCCCAGGTCC 6331 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTC-CTCTTAATCTCTTC 147218 || |||||||| ||||| | | | |||| ||||||||| | | | | Sbjct 6330 GCCGGGTTCCACGCCGACATGATGATGCGCCGCGAGTCGGGGTTCTGGCGCAGGGTGCGC 6271 Query 147219 GATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTA 147278 | ||| ||||||||||||||||| |||| ||||| | |||||| | ||| Sbjct 6270 -ACAACGTCGGCCAGCTGGTCCACGCCCTTGCCCGTGTAGTCGGCGTGGCAGTCGATGTA 6212 Query 147279 CCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTC 147326 || || ||||||| ||||||||||||||| || || |||||||| Sbjct 6211 AGGCGCACCGAAGTGCCGCCACTGGAAGCCGTATACAGGACCCAGGTC 6164 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/166 (72%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 147408 GGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCC 147467 |||||||| | | ||| ||| |||| ||||||||||| || ||||||||| || || Sbjct 5935 GGAGAGCTGCGAGGCGTCTGTGCAGCCGCGGATGAACCACAGGAGCTCCTCCTTGACGCC 5876 Query 147468 CCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAA---CTGGTCCCTCAGCGAATACCT 147524 | ||| ||| | |||||| |||||||| ||||| | ||| | ||||||| | | Sbjct 5875 GCGCCAGAAGGTGCGCTTGGTCGTCAGCAGCGGGAAGCGCCCGTCGCGCAGCGAAAAGCG 5816 Query 147525 CGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCC 147570 | || | |||||| |||| ||||||||||| || | |||| Sbjct 5815 CATTTGCGCGCCAAACTGCGACACGGTGCCCGTGCCGGTGCGGTCC 5770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583482792369600