Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq30 154 1e-32 seq3 107 2e-18 >seq30 Length=128594 Score = 154 bits (170), Expect = 1e-32 Identities = 679/1066 (64%), Gaps = 13/1066 (1%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||||| ||||||| || ||||| ||| | | || | | ||| || | Sbjct 4155 CAGCACATGCTCATGCGCGTCGCCTGCGGCATCCACTTCAACAACCTGGCCGCTGCGATC 4096 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| ||| ||| || ||||| || ||||| | || | Sbjct 4095 GAGACGTACGACCTCATGTCGCAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAAC 4036 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || ||||| | ||| || |||| ||||| || | | |||||| || ||| Sbjct 4035 GCCGGCACGTGCATGCCGCAGCTGTCGTCGTGCTTCCTCGTCACCATGAAGGAGGACTCG 3976 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803 ||||| ||||| ||| ||||||| ||||| | || || || | | |||||| Sbjct 3975 ATCGAGGGCATCTACGACACGCTTAAGACGTGCGCGATGATCTCGAAGCAGGCCGGCGGC 3916 Query 7804 ATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGA 7863 || || || || ||||||| ||||||| ||| | |||| ||||||||| Sbjct 3915 ATTGGCCTCGCGGTTCACGACGTCCGCGCCACCGGCTCCTACATCCGCGGCACCAACGGC 3856 Query 7864 AAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGAC 7923 | | | ||| | | || ||| ||||||||||||| ||| ||| ||| | || ||| Sbjct 3855 ACCTCGAACGGCCTGGTCCCGATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTCGAC 3796 Query 7924 CAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGAC 7980 ||||| ||| ||||| ||||| ||| |||| |||||||||||||||| ||| Sbjct 3795 CAGGGTGGAGGCCGCCGCAAGGGCGCATTCGCCGTCTACCTGGAGCCGTGGCACGCCGAC 3736 Query 7981 ATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGAT 8040 || | | || | ||||| ||| || | ||| || |||||||| Sbjct 3735 ATCATGTCCTTCCTGGACCTGCGCAAGAACCACGGCTCCGAGGAGGCGCGCGCGCGCGAC 3676 Query 8041 CTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAA 8100 || |||| ||| | |||||| ||| || || ||| |||||| | ||| | Sbjct 3675 CTTTTCTACGGCCTCTGGGTGTGCGACCTCTTCATGGAGCGCGTGGAGAAGAACGAGCTC 3616 Query 8101 TGGTCGCTCATGTGCCCCGATCGTTGC-CCTTTATTAAAAAACGTTTACGGTTCAAAATT 8159 ||||||||| | || |||| || || || | || | || | | || Sbjct 3615 TGGTCGCTCTTTTG-CCCGCACGAGGCGCCGGGGCTGGCCGACTCGTGGGGCGCCGACTT 3557 Query 8160 TGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCA---AGTGAAAGC 8216 || | |||||| || ||||| || | ||| || || |||||| | || || Sbjct 3556 CGAGCGGCTGTACACGCAGTACGAGAACCAGGGC-CG--CGCGCGGCAGACGATCAAGGC 3500 Query 8217 GCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCT 8276 ||||| ||| ||| | ||||| || | || || || | ||| ||||| || Sbjct 3499 GCGCGCGCTGTGGACGGCCGTGCTCGAAGCGCAGCAGGAGACGGGCACGCCCTACATCCT 3440 Query 8277 GTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAG 8336 ||||| ||||| |||||| ||| || || ||| ||||||| || | ||| Sbjct 3439 CTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCAGAACCTGGGCACGATCCGCTGCTC 3380 Query 8337 CAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCT 8396 || |||||| | || || || |||||| |||||||||| |||||||| ||||| || Sbjct 3379 GAACCTGTGCACGGAGATCGTCGAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCT 3320 Query 8397 AGCGTCGGT-GTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAAC 8455 || ||| | | | | || ||| ||||| || |||| | ||| |||||||| | | Sbjct 3319 CGCCTCGATCGCGCTCAACCGC-TTCGTCGACGAACGCACGGGCACCTACGACTTCCAGC 3261 Query 8456 AATTGAAAAACGCCGTGCAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATT 8515 || | | |||||| | ||||| | | ||| |||| || |||| Sbjct 3260 GCCTGTTTGAGGTGACGCAAGTCGCCACGCGCAACCTCAACCGCGTCATCGACATCAACC 3201 Query 8516 TTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCG 8575 | || || | | || |||||| |||||||||||| | ||| | || | || | Sbjct 3200 TGTACCCGGTCAAGGAGGCGCGCACGAGCAACATGCGCCACCGCCCCATCGGGCTCGGTG 3141 Query 8576 TGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGA 8621 | || || |||||||||||| | | | |||| || || ||||| Sbjct 3140 TCCAGGGCCTGGCCGACGCGCTCATCCTTATGCGGCTGCCGTACGA 3095 >seq3 Length=187283 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| |||||||| || || || | |||||||||| ||| |||| | ||||||| Sbjct 12513 ACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGCAAGGGTGCGGCCGTCGTCG 12454 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || | |||||||| || || || ||||| || || || || Sbjct 12453 AGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 12394 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || ||||| | || | |||||||| || || || || ||||| || || Sbjct 12393 ATCTTCTGCTTGACGGTCTCGATCGTGTCGGAATGGTCGACATCAAGCGTAATAGTCTTG 12334 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | | || || |||||||| ||||| Sbjct 12333 TTAGCGAGGGTCTTGACGAAAATCTGCAT 12305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505393889319280