Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq30 147 7e-30 >seq30 Length=128594 Score = 147 bits (162), Expect = 7e-30 Identities = 375/555 (68%), Gaps = 27/555 (5%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || |||||||||||| ||| ||||||||||| || || || ||| ||| Sbjct 3837 CCGATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTCGACCAGGGTGGAGGCCGCCGC 3778 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 || || ||| || |||||||||||||||||||||||||||| || || ||| Sbjct 3777 AAGGGCGCATTCGCCGTCTACCTGGAGCCGTGGCACGCCGACAT---CATGTCCTTCCTG 3721 Query 255101 ---CTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTC 255157 ||| | | || |||| |||||||| | ||| |||||| | | | || || Sbjct 3720 GACCTGCGCAAGAACCACGGCTCCGAGGAGGCGCGCGCGCGCGACCTTTTCTACGGCCTC 3661 Query 255158 TGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCATGTG 255216 ||| ||||| || || ||| |||||||| | || ||||| |||| ||| | || Sbjct 3660 TGGGTGTGCGACCTCTTCATGGAGCGCGTGGAGAAGA-ACGAGCTCTGGTCGCTCTTTTG 3602 Query 255217 TCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCT 255276 || || |||| || || | |||||| ||||| | ||| || || ||||| Sbjct 3601 CCCGCACGAGGCGCCGGGGCTGGCCGACTCGTGGGGCGCCGACTTCGAGCGGCTGTACAC 3542 Query 255277 GGAGTACGAG----CGTGCCGGCCGGTTCGTACG-CCAAGTGCCCGCGAAGAAGATCTGG 255331 | |||||||| | |||| || | ||| |||| || |||| | | ||| Sbjct 3541 GCAGTACGAGAACCAGGGCCGCGCGCGGCAGACGATCAAG-GCGCGCG----CGCTGTGG 3487 Query 255332 AACACGATGGTGCGCA-TGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGAC-C 255389 | | || | || | ||||| ||| || || | ||| | | | | |||| ||| | Sbjct 3486 ACGGCCGTGCT-CGAAGCGCAGCAGGAGACGGGCACGCCCTACATCCTCTACAAGGACGC 3428 Query 255390 ACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTGCA 255449 || |||| ||||||||| | ||| || ||||| ||| ||||||||||||||| Sbjct 3427 GTGCAACCGCA-AGTCGAACCAGCAGAACCTGGGCACGATCCGCTGCTCGAACCTGTGCA 3369 Query 255450 CCGAGATTACGT--TGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTCCAT 255507 | ||||| ||| | ||||||| | | ||||||||||| |||||| | || || || Sbjct 3368 CGGAGAT--CGTCGAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTCGCCTCGAT 3311 Query 255508 CTCGCTCACACCGCT 255522 | |||||| |||||| Sbjct 3310 CGCGCTCA-ACCGCT 3297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588321469703730