Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq30 188 9e-43 seq53 95.1 2e-14 seq311 82.4 1e-10 >seq30 Length=128594 Score = 188 bits (208), Expect = 9e-43 Identities = 536/815 (66%), Gaps = 13/815 (2%) Strand=Plus/Plus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | || || || || | ||| || | ||||| |||| |||| ||| Sbjct 3350 GTGTACTCGACGATCTCCGTGCACAGGTTCGAGCAGCGGATCGTGCCCAGGTTCTGCTGG 3409 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||| ||||||||| ||||||||||| ||||||||||| ||||||||| ||| Sbjct 3410 TTCGACTTGCGGTTGCACGCGTCCTTGTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGC 3469 Query 111398 GATTTGAGAATAGCCTTCCAAACATCG-GCGGC-TGGTACAATGGCGTTGGCCCGTCCCT 111455 | || ||| | ||| |||| | || ||| | || | || || || || |||| Sbjct 3470 GCTTCGAGCACGGCCGTCCACAGCGCGCGCGCCTTGATCGTCTGCCG--CGCGCGGCCCT 3527 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 |||||||| ||||| || || || || | ||| || ||||| || || | Sbjct 3528 GGTTCTCGTACTGCGTGTACAGCCGCTCGAAGTCGGCGCCCCACGAGTCGGCCAGCCCCG 3587 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAA 111573 | |||| || || || || || ||||| || | | ||| ||| || |||| |||||| Sbjct 3588 GCGCCTCGTGCGGGCAAAAGAGCGACCA--GAGCTCGTTCTTCTCCACGCGCTCCATGAA 3645 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633 ||||| | ||| ||| | || || || | || ||||| ||| || || Sbjct 3646 GAGGTCGCACACCCAGAGGCCGTAGAAAAGGTCGCGCGCGCGCGCCTCCTCGGAGCCGTG 3705 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||| || | || ||||| |||||| || |||||||| ||||| || ||||| || Sbjct 3706 GTTCTTGCGCAGGTCCAGGAAGGACATGATGTCGGCGTGCCACGGCTCCAGGTAGACGGC 3765 Query 111694 GATAGATCCCTTTCGACG---CCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 111750 || | ||||| || || ||| | || | || |||||||| ||| ||| || || Sbjct 3766 GAATGCGCCCTTGCGGCGGCCTCCACCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACAC 3825 Query 111751 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 111810 ||| ||||| || | | || | || || || || || || || || | Sbjct 3826 GCGCAGCATCGGGACCAGGCCGTTCGAGGTGCCGTTGGTGCCGCGGATGTAGGAGCCGGT 3885 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870 ||| | || || || | | ||||| || || ||| ||| ||||| ||| || Sbjct 3886 GGCGCGGACGTCGTGAACCGCGAGGCCAATGCCGCCGGCCTGCTTCGAGATCATCGCGCA 3945 Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 111930 | | |||| || | ||||| || | ||| ||||||||||| ||| || |||||||| Sbjct 3946 CGTCTTAAGCGTGTCGTAGATGCCCTCGATCGAGTCCTCCTTCATGGTGACGAGGAAGCA 4005 Query 111931 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 |||| |||||| | || || || |||||||| || || | ||||| |||| Sbjct 4006 CGACGACAGCTGCGGCATGCACGTGCCGGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAA 4065 Query 111991 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049 | || | || ||||| |||||| ||||| | ||| | | || | ||||| Sbjct 4066 C-CACTTCTGCGACATGAGGTCGTACGTCTCGATCGCAGCGGCCAGGTTGTTGAAGTGGA 4124 Query 112050 TGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 ||||| ||||| ||||||| ||||| ||||||| Sbjct 4125 TGCCGCAGGCGACGCGCATGAGCATGTGCTGTGGG 4159 >seq53 Length=108086 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || || || || || || || |||||| || || ||||| || Sbjct 12965 GTGGAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCTTGCC 12906 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || |||||||||||||| ||||| || || Sbjct 12905 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 12846 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || | | ||||| |||||||| || Sbjct 12845 GGCGAAGCCGACGAGGCGCTCGGCGAACGA 12816 >seq311 Length=46126 Score = 82.4 bits (90), Expect = 1e-10 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 181824 CGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCG 181883 |||||||| || ||||| | ||| |||| ||| |||||||| || || |||| Sbjct 39982 CGCGTACCGAACTGACCGCTCGGCCACAGAAAGTTGATGTTGTTCGAGCCGACGTAGTTC 40041 Query 181884 TTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACTTG 181943 | |||| || |||||||| | | || || ||||| ||||||||||| || || || Sbjct 40042 TGCGCCAGGTTCACGATGGTGCCGGAGAGCGAGACTTCGCCGTGGTGGTAGGCCGAGTTC 40101 Query 181944 TCCGCAACATATGCCGC-CAACTGTGCCACCTTCATTTCATCTTTGAGGTTCTTGTGGAA 182002 || ||||| || ||||| | ||| || ||||| || || | |||||| | ||| Sbjct 40102 TCGGCAACGTA-GCCGCTGAGCTGCGCGACCTTGATCTCGTTAACGAGGTTGCGCTTGAA 40160 Query 182003 GCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| || | | ||| || | ||| |||||||| || || Sbjct 40161 GCACGCGAAGAGCACCTTGCGCTGACCGGGCTTGAGGCCGTC 40202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026394814400