Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq30 239 6e-58 seq53 109 7e-19 seq311 98.7 1e-15 >seq30 Length=128594 Score = 239 bits (264), Expect = 6e-58 Identities = 881/1363 (65%), Gaps = 28/1363 (2%) Strand=Plus/Plus Query 118152 ACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCAC 118211 || ||||| || || || ||||| | || |||| || | |||||| | ||| || || Sbjct 2741 ACGAACTCGCCGGCCAGCGTGCGCCGCACGTAGAGGTTCGACGTGTAGGCCTCGAACGAC 2800 Query 118212 TCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTG 118271 || ||||| |||| ||| || | ||| ||| ||||||||||| |||| ||||| | Sbjct 2801 TCGTTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGGGCATGGGCGCCACAAGAAGCGAG 2860 Query 118272 TTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTG------ 118325 || || || || | | ||||| |||||||| ||| ||||||| || Sbjct 2861 TTGCGCAGCCCGACGCGCTTGATGCGCTCCTTGAGCGCGGCCCAGTCCCAGCGCCCGCCC 2920 Query 118326 AGCTTTGT---CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 118382 | | | | |||| | |||||| || ||||| || || | || || ||||| Sbjct 2921 ACCGTCGCGGGCTCCACGCCCCACATGTCGAACTGCAGCTCGCCGCGCGAGGCCGGCGAG 2980 Query 118383 CCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCT 118442 ||| || | ||| || | ||| || ||| |||| ||| | |||| || || Sbjct 2981 CCCGGGAAGGACTCGTACGCGCCGTCGCGCTCGGCCATGTCGCACGACGCCGTCAGCGCG 3040 Query 118443 GCGTGATACATTGTTTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAA 118501 ||| || || || |||| ||| || | |||| |||| ||||| ||||| || | Sbjct 3041 GCGAAGTAGATGGTCGCAAAGATGTCGCGG-TTCAGCGCCTGCGCCTCCTCGGACTCGTA 3099 Query 118502 CGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGC 118560 || || || || || || | | || || || || ||||||||||| || || |||| Sbjct 3100 CGGCAGCCG-CATAAGGATGAGCGCGTCGGCCAGGCCCTGGACACCGAGCCCGATGGGGC 3158 Query 118561 GATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCC 118620 | || | ||| || | | || || || || || || | || | ||||| || | Sbjct 3159 GGTGGCGCATGTTGCTCGTGCGCGCCTCCTTGACCGGGTACAGGTTGATGTCGATGACGC 3218 Query 118621 TATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGC 118680 || || || ||| | || | || | ||| || | | | || | ||| Sbjct 3219 GGTTGAGGTTGCGCGTGGCGACTTGCGTCACCTCAAACAGGCGCTGGAAGTCGTAGGTGC 3278 Query 118681 GAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCT 118740 || ||| | ||| | || ||||| || || || || ||||| | || Sbjct 3279 CCGTGCGTTCGTCGACGAAGCGGTTGAGCGCGATCGAGGCGAGGTTGCACACGGCCACCT 3338 Query 118741 CATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCA 118800 | || |||||||| | || |||||||||| ||| || | || ||||||| Sbjct 3339 CGTCGGGCGACGTGTACTCGACGATCTCCGTGCACAGGTTCGAGCAGCGGATCGTGCCCA 3398 Query 118801 AGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCG 118860 ||||| || || ||||| ||| ||||| |||||||| || ||||| ||||| |||| Sbjct 3399 GGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCCTTGTAGAGGATGTAGGGCGTGCCCG 3458 Query 118861 TCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCG-GCAGCTGGCACAG-TGGCGTT 118918 ||||| || | | ||| | ||| |||| | || || || | | || || Sbjct 3459 TCTCCTGCTGCGCTTCGAGCACGGCCGTCCACAGCGCGCGCGCCTTGATCGTCTGCCGC- 3517 Query 118919 GGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTC 118978 || || |||| | |||||||| ||||| || || || || | ||| | || Sbjct 3518 -GCGCGGCCCTGGTTCTCGTACTGCGTGTACAGCCGCTCGAAGTCGGCGCCCCACGAGTC 3576 Query 118979 TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCG 119038 | ||||| || |||| | ||||| ||||| ||||| | | || ||| || || Sbjct 3577 GGCCAGCCCCGGCGCCTCGTGCGGGCAAAAGAGCGACCAGAGCTCGTTCTTCTCCACGCG 3636 Query 119039 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCGACAGCGAGCTTCTT 119097 || |||||||||||| | |||||| |||| |||| || || || ||| || || | Sbjct 3637 CTCCATGAAGAGGTCGCACACCCAGAG-GCCGTAGAAAAGGTCGCGCGCGCGCGCCTCCT 3695 Query 119098 CATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 119157 | || || || |||| |||| ||| |||||| || ||||||||||| |||| Sbjct 3696 CGGAGCCGTGGTTCTTGCGCAGGTCCAGGAAGGACATGATGTCGGCGTGCCACGGCTCCA 3755 Query 119158 GGTACACCGCGATTGACCCCTTACGACGACC---AGCCTGGTTTACATACCTCGCAGTGG 119214 |||| || |||| || ||||| || || || | |||||| || || | ||| ||| Sbjct 3756 GGTAGACGGCGAATGCGCCCTTGCGGCGGCCTCCACCCTGGTCGACGTAGCGCGCCGTGT 3815 Query 119215 CGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT-- 119272 ||| || || || ||||| || | | || | || ||| || || || || || Sbjct 3816 TGTTGAACACGCGCAGCATCGGGACCAGGCCGTTCGAGGTGCCGTTGGTGCCGCGGATGT 3875 Query 119273 ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGA 119332 | ||| | |||| | ||| ||||| | | ||||| || || ||| ||| || Sbjct 3876 AGGAGCCGG--TGGCGCGGACGTCGTGAACCGCGAGGCCAATGCCGCCGGCCTGCTTCGA 3933 Query 119333 GATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGC 119392 ||| ||||||| | | || || ||||||| || ||||||||||| |||| | | Sbjct 3934 GATCATCGCGCACGTCTTAAGCGTGTCGTAGATGCCCTCGATCGAGTCCTCCTTCATGGT 3993 Query 119393 GATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGT 119452 || ||||||||| ||||| || ||| || || || ||||||||||| || || | Sbjct 3994 GACGAGGAAGCACGACGACAGCTGCGGCATGCACGTGCCGGCGTTGAAGAGCGTGGGGGA 4053 Query 119453 CGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTC 119494 |||||| ||||| || | || ||||| |||||| ||||| Sbjct 4054 GGCGTGGGTGAAC-CACTTCTGCGACATGAGGTCGTACGTCTC 4095 >seq53 Length=108086 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| || |||||||| || || |||||| || || ||||| || Sbjct 12965 GTGGAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCTTGCC 12906 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||||| ||||||||||| ||||| || || Sbjct 12905 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 12846 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 ||||| | | ||| ||||| || || || Sbjct 12845 GGCGAAGCCGACGAGGCGCTCGGCGAACGA 12816 >seq311 Length=46126 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 179083 CGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCA 179142 ||||| || || ||||| | ||| || | ||||| ||||| || || | ||||| Sbjct 39982 CGCGTACCGAACTGACCGCTCGGCCACAGAAAGTTGATGTTGTTCGAGCCGACGTAGTTC 40041 Query 179143 TTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTG 179202 | |||| || || || || | | ||| |||||||| ||||| ||||| ||||| || Sbjct 40042 TGCGCCAGGTTCACGATGGTGCCGGAGAGCGAGACTTCGCCGTGGTGGTAGGCCGAGTTC 40101 Query 179203 TCCGCCACATATGCCGCCAA-CTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAA 179261 || || || || ||||| | |||||| ||||| ||||| | |||||| | ||| Sbjct 40102 TCGGCAACGTA-GCCGCTGAGCTGCGCGACCTTGATCTCGTTAACGAGGTTGCGCTTGAA 40160 Query 179262 GCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCG 179304 |||||| | | |||||| | || ||||||||||||||| Sbjct 40161 GCACGCGAAGAGCACCTTGCGCTGACCGGGCTTGAGGCCGTCG 40203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429680465840