Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq30 194 2e-44 seq53 131 2e-25 seq311 100 3e-16 >seq30 Length=128594 Score = 194 bits (214), Expect = 2e-44 Identities = 925/1456 (64%), Gaps = 22/1456 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||||||| ||||| |||||||||| ||| ||| || || | || | | ||| Sbjct 4159 CCCACAGCACATGCTCATGCGCGTCGCCTGCGGCATCCACTTCAACAACCTGGCCGCTGC 4100 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| |||||| ||||| || | || ||||| ||||| | || || |||| Sbjct 4099 GATCGAGACGTACGACCTCATGTCGCAGAAGTG-GTTCACCCACGCCTCCCCCACGCTCT 4041 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || || | || || |||| |||||||| || ||| ||||||| Sbjct 4040 TCAACGCCGGCACGTGCATGCCGCAGCTGTCGTCGTGCTTCCTCGTCACCATGAAGGAGG 3981 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| ||| | || ||||| | || |||| | ||| ||| ||||| ||| ||| | Sbjct 3980 ACTCGATCGAGGGCATCTACGACACGCTTAAGACGTGCGCGATGATCTCGAAGCAGGCCG 3921 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | | || || || | |||| || || || || || | Sbjct 3920 GCGGCATTGGCCTCGCGGTTCACGACGTCCGCGCCACCGGCTCCTACATCCGCGGCACCA 3861 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || | | || ||||| ||||| || ||| ||| |||||||| | Sbjct 3860 ACGGCACCTCGAACGGCCTGGTCCCGATGCTGCGCGTGTTCAACAACACGGCGCGCTACG 3801 Query 104580 TAAATCAAGCTGGG---CGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | ||| || || ||||| | |||| ||||| || ||||| ||||||| Sbjct 3800 TCGACCAGGGTGGAGGCCGCCGCAAGGGCGCATTCGCCGTCTACCTGGAGCCGTGGCACG 3741 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | || |||||| ||||| || |||| ||||| || |||||||||||| | Sbjct 3740 CCGACATCATGTCCTTCCTGGACCTGCGCAAGAACCACGGCTCCGAGGAGGCGCGCGCGC 3681 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 |||| || |||| || |||||| | || ||||||||| || | || ||| ||| | Sbjct 3680 GCGACCTTTTCTACGGCCTCTGGGTGTGCGACCTCTTCATGGAGCGCGTGGAGAAGAACG 3621 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 ||||| |||||||| || || |||| || || || |||| | ||| | | Sbjct 3620 AGCTCTGGTCGCTCTTTTGCCCGCACGAGGCGCCGGGGCTGGCCGACTCGTGGGGCGCCG 3561 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-GACGGTGCCA 104875 | || || || ||||| |||||||| | | || || ||| | || |||| | | | Sbjct 3560 ACTTCGAGCGGCTGTACACGCAGTACGAGAACCAGGGCCGCGCG-CGGCAGACGAT-CAA 3503 Query 104876 GCTGC-CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACAT 104934 | || || |||||| || | ||| | | || ||||| || || || ||||| Sbjct 3502 GGCGCGCGCGCTGTGGACGGCCGTGCTCGAAGCGCAGCAGGAGACGGGCACGCCCTACAT 3443 Query 104935 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 104994 || ||||| ||||| || |||| ||| || || |||| |||| |||| | Sbjct 3442 CCTCTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCAGAACCTGGGCACGATCCGCTG 3383 Query 104995 TTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 105054 || || || || || || ||| | || | || || ||| ||| ||||| || Sbjct 3382 CTCGAACCTGTGCACGGAGATCGTCGAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAA 3323 Query 105055 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 105114 |||||| || ||||| ||| | | || || | || || | || | | Sbjct 3322 CCTCGCCTCGATCGCGCTCAACCGCTTCGTCGACGAACGCACGGGCACCTACGACTTCCA 3263 Query 105115 AAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAA 105174 || || || ||| || | ||| ||||| ||| | || || || | || Sbjct 3262 GCGCCTGTTTGAGGTGACGCAAGTCGCCACGCGCAACCTCAACCGCGTCATCGACATCAA 3203 Query 105175 TTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 105234 | ||||| || || || || | || ||| | ||||| || || || ||||| Sbjct 3202 CCTGTACCCGGTCAAGGAGGCGCGCACGAGCAACATGCGCCACCGCCCCATCGGGCTCGG 3143 Query 105235 TGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGC 105294 ||| ||||| || || || | |||| ||| || | | | || ||||| || || Sbjct 3142 TGTCCAGGGCCTGGCCGACGCGCTCATCCTTATGCGGCTGCCGTACGAGTCCGAGGAGGC 3083 Query 105295 GAAGGAAATCAATGCGCG-CATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTT 105353 | ||| | || |||| ||| |||| |||||| || |||||| || |||| | Sbjct 3082 GCAGGCGCTGAA-CCGCGACATCTTTGCGACCATCTACTTCGCCGCGCTGACGGCGTCGT 3024 Query 105354 CAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAG 105413 || |||| ||| || || | || || |||| ||| || || || || | | Sbjct 3023 GCGACATGGCCGAGCGCGACGGCGCGTACGAGTCCTTCCCGGGCTCGCCGGCCTCGCGCG 2964 Query 105414 GGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAGCT------TCACTACGACT 105464 | | ||| || || || ||||||| | ||| || | | | | || |||| Sbjct 2963 GCGAGCTGCAGTTCGACATGTGGGGCGTGGAGCCCGCGACGGTGGGCGGGCGCTGGGACT 2904 Query 105465 GGGAAGCTCTCAAGGAACGCATCAAG-GAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 ||| || |||||||| ||||||||| | | ||| || || ||| || || |||| Sbjct 2903 GGGCCGCGCTCAAGGAGCGCATCAAGCGCGTCGGG-CTGCGCAACTCGCTTCTTGTGGCG 2845 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| || ||| ||| | || ||| |||| || || || | || || ||||| Sbjct 2844 CCCATGCCCACGGCCAGCACGTCGCAGATCCTGGGCAACAACGAGTCGTTCGAGGCCTAC 2785 Query 105584 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 105643 ||| ||||| |||| || | | || || || || ||||| ||| |||||| ||| Sbjct 2784 ACGTCGAACCTCTACGTGCGGCGCACGCTGGCCGGCGAGTTCGTGTGCGTCAACTCGCAC 2725 Query 105644 CTCGTGGATGACCTCA 105659 || || ||||||| Sbjct 2724 CTGCTGCGCGACCTCA 2709 >seq53 Length=108086 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| ||| || || || || ||||| ||||||||||| || ||| Sbjct 12816 TCGTTCGCCGAGCGCCTCGTCGGCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCC 12875 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| || ||||| || ||| |||||||||| Sbjct 12876 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCAAGATGCCCGGACTCACCTTCTCCAAC 12935 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 12936 GAGCTCATCTCGCGCGACGAGGGCCTCCAC 12965 >seq311 Length=46126 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 168476 CGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCA 168535 |||||||| |||||||| | |||| |||| ||||| ||||| || || | ||||| Sbjct 39982 CGCGTACCGAACTGACCGCTCGGCCACAGAAAGTTGATGTTGTTCGAGCCGACGTAGTTC 40041 Query 168536 TTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTC 168595 | ||||| || || || ||| | | ||| |||||||| ||||||||||| || ||| Sbjct 40042 TGCGCCAGGTTCACGATGGTGCCGGAGAGCGAGACTTCGCCGTGGTGGTAGGCCGAGTTC 40101 Query 168596 TCTGCGACAAATGCCGC-CAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGGAA 168654 || || || | ||||| | |||||| || || ||||| | ||| || | ||| Sbjct 40102 TCGGCAACGTA-GCCGCTGAGCTGCGCGACCTTGATCTCGTTAACGAGGTTGCGCTTGAA 40160 Query 168655 GCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 ||| ||| | | |||||||| || |||||||| || || Sbjct 40161 GCACGCGAAGAGCACCTTGCGCTGACCGGGCTTGAGGCCGTC 40202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255594397360