Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq30 255 6e-63 seq311 147 2e-30 seq47 93.3 5e-14 seq53 84.2 2e-11 >seq30 Length=128594 Score = 255 bits (282), Expect = 6e-63 Identities = 520/759 (69%), Gaps = 14/759 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||||||||||| || |||||| || || | ||| || ||||||||| Sbjct 4145 TCATGCGCGTCGCCTGCGGCATCCACTTCAACAACCTGGCCGC-TGCGATCGAGACGTAC 4087 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 ||| | ||| || |||| || || |||||| | || || || |||||||| || ||| Sbjct 4086 GACCTCATGTCGCAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCCGGCACG 4027 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || ||| ||||| |||||||| || | |||||||| ||||||||||| ||| Sbjct 4026 TGCATGCCGCAGCTGTCGTCGTGCTTCCTCGTCACCATGAAGGAGGACTCGATCGAGGGC 3967 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| ||||| ||| ||| || ||||| ||| | | || || || || || Sbjct 3966 ATCTACGACACGCTTAAGACGTGCGCGATGATCTCGAAGCAGGCCGGCGGCATTGGCCTC 3907 Query 53432 -CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | | | ||| |||||| || | |||| | ||| || || |||||| | | | Sbjct 3906 GCGGTTCACGA-CGTCCGCGCCACCGGCTCCTACATCCGCGGCACCAACGGCACCTCGAA 3848 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || | || || ||||| ||||| |||||||||||||| || |||||| |||||||||| Sbjct 3847 CGGCCTGGTCCCGATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTCGACCAGGGTGG 3788 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 || |||||||| | |||||| ||||||| |||||||||||||||||||| ||| Sbjct 3787 AGGCCGCCGCAAGGGCGCATTCGCCGTCTACCTGGAGCCGTGGCACGCCGACATCATGTC 3728 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TA 53669 || || || ||||| ||| || || ||| ||| |||| || ||||| || || Sbjct 3727 CTTCCTGGACCTGCGCAAGAACCACGGCTCCGAGGAGGCGCGCGCGCGCGACCTTTTCTA 3668 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 | || || ||| | |||||||||||| | ||||||||| ||||| |||| | Sbjct 3667 CGGC-CTCTGGGTGTGCGACCTCTTCATGGAGCGCGTGGAGAAGAACGAGCTCTGGTCGC 3609 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTC---TACGGTGAGGAGTTTAACG 53786 | | |||||| ||||| || |||| | || | | | || | || || | Sbjct 3608 TCTTTTGCCCGCACGAG-GCGCCGG--GGCTGGCCGACTCGTGGGGCGCCGACTTCGAGC 3552 Query 53787 AGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 | |||| | ||||| ||||||||| | ||| | |||||||||| | | Sbjct 3551 GGCTGTACACGCAGTACGAGAACCAGGGCCGCGCGCGGCAGACGATCAAGGCGCGCGCGC 3492 Query 53847 TATGGGATGCAATCCTC-AAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| || | ||| ||| | ||| ||||||||| ||||| ||||| ||||||| Sbjct 3491 TGTGGACGGCCGTGCTCGAAGCG-CAGCAGGAGACGGGCACGCCCTACATCCTCTACAAG 3433 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 || || |||| ||| |||||| ||||| | ||| Sbjct 3432 GACGCGTGCAACCGCAAGTCGAACCAGCAGAACCTGGGC 3394 Score = 194 bits (214), Expect = 2e-44 Identities = 560/847 (66%), Gaps = 41/847 (5%) Strand=Plus/Minus Query 55115 GAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCG 55174 || ||||||| || | || || ||||| ||||| |||||||||| || |||||| Sbjct 3252 GAGGTGACGCAAGTCGCCACGCGCAACCTCAACCGCGTCATCGACATCAACCTGTACCCG 3193 Query 55175 ACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGC 55234 | | |||||||| | |||| | || ||||| ||||||| ||||||| |||||| Sbjct 3192 GTCAAGGAGGCGCGCACGAGCAACATGCGCCACCGCCCCATCGGGCTCGGTGTCCAGGGC 3133 Query 55235 TTGGCCGACA---TCTTCATGATGCTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAA 55291 |||||||| || || | |||| | |||| | ||| || || || | | Sbjct 3132 CTGGCCGACGCGCTCATCCTTATGC---GGCTGCCGTACGAGTCCGAGGAGGCGCAGGCG 3076 Query 55292 ATTAACCAGGACATCTTCAGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTG 55351 | |||| |||||||| ||||||||| || ||||| || |||||| | || Sbjct 3075 CTGAACCGCGACATCTTTGCGACCATCTACTTCGCCGCGCTGACGGCGTCGTGCGACATG 3016 Query 55352 GCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGC-TGACAAGG-GACTTC 55409 || | |||| || | |||||| | |||| | ||||| || | | || || | Sbjct 3015 GCCGAGCGCGACGGCGCGTACGAGTCCTTCCCGGGCTCGCCGGCCTCGCGCGGCGAG--C 2958 Query 55410 TCCAGTTCGATCTATGGGGCA---AGTCTGACCCCATG---------------TTTGACA 55451 | |||||||| | |||||| || | | | || | | | Sbjct 2957 TGCAGTTCGACATGTGGGGCGTGGAGCCCGCGACGGTGGGCGGGCGCTGGGACTGGGCCG 2898 Query 55452 AGTTGAAGCATGACATTCA-CTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATG 55510 | | ||| | ||| | | || |||| | |||||||| || || |||||||| ||| Sbjct 2897 CGCTCAAGGAGCGCATCAAGCGCGTCGGGC-TGCGCAACTCGCTTCTTGTGGCGCCCATG 2839 Query 55511 CCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACC 55570 || || || ||| | |||||| |||||||||||||| |||||||| | |||||| | Sbjct 2838 CCCACGGCCAGCACGTCGCAGATCCTGGGCAACAACGAGTCGTTCGAGGCCTACACGTCG 2779 Query 55571 AACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTC 55630 ||| ||||| |||| || || || || || ||||| || ||||| |||||| | Sbjct 2778 AACCTCTACGTGCGGCGCACGCTGGCCGGCGAGTTCGTGTGCGTCAACTCGCACCTGCTG 2719 Query 55631 AAGGACCTGCAGAAGATCAACAA--GTGGAACCCGCAGATCAAGACGGATATTGTGCGGA 55688 ||||| || | || | |||||||| | | |||||| | | | | Sbjct 2718 CGCGACCT-CATCCGC-CAGGGACTGTGGAACCAGACGCTCAAGAACAAGCTCATCGCCA 2661 Query 55689 ACGGGGGGTCCGTCCAGAATCTG---GAGATTCCTCTGCGTCTCAAG-GAGATTTACCGG 55744 || || || || ||| ||| ||||| || | | || | ||||| ||| | Sbjct 2660 ACAACGGCTCTGTGCAGGGGCTGACCGAGATCCCCGAG-GACTTGCGCGAGATCTACAAG 2602 Query 55745 ACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTAC 55804 |||||||||||||| |||| || || ||||| || || || || |||||| Sbjct 2601 ACGGTGTGGGAGATGAAGGGCAAGACGCTCATCAACATGGCCGCCGACCGCGGCGCGTAC 2542 Query 55805 ATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTG-GCCAAGTTGAG 55863 ||||||||||| ||||| | ||| || |||| || | | ||| |||||| ||| Sbjct 2541 ATCGACCAGTCGCAGTCGTTCAACGTCCACATGCCCAA-CGTCAACTACGCCAAGCTGAC 2483 Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||||||||||||||| |||||||||||| ||||||||||| |||||||| || || || Sbjct 2482 CTCGATGCACTTTTACGCGTGGAAGAAGGGCCTCAAGACGGGCATGTACTACCTCCGCAC 2423 Query 55924 CCGCGCC 55930 |||||| Sbjct 2422 GCGCGCC 2416 >seq311 Length=46126 Score = 147 bits (162), Expect = 2e-30 Identities = 278/403 (69%), Gaps = 6/403 (1%) Strand=Plus/Plus Query 152763 GAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGAT 152822 ||| | ||||| | || ||||||||||||||| ||||| | ||| ||| |||||||| Sbjct 40665 GAAGAGGTTGATCAGCAGGCCCTTGATGTGCGAGCCGTCGTGGTCCTGGTCCGTCATGAT 40724 Query 152823 CATCAGACGACCGTAGCGCAGGTCACGTAGTGAC-CCGTAGACCTTTCCATGTTGAAGCC 152881 ||| | | |||||||||| | | | | ||| | ||| || || || || || || | Sbjct 40725 CATGATGTGGCCGTAGCGCA-GACTCTTGGTGTCGGTGTACACTTTGCCCTGCTGCAGAC 40783 Query 152882 CGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCAT 152941 ||||||||| || || |||| | || | || || | | ||| || || || | Sbjct 40784 CGAGGATCTGCTTCAGCATGGAGATCTCGGCGTTCTCCATGATCTGCTTGTGCGCCGCGT 40843 Query 152942 CCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAA 153001 | || || ||| || ||| || || || || ||||||||| | || ||| || | | Sbjct 40844 CGCGCACGTTGAGCACCTTGCCGCGCAGCGGGAACACGCCGTAGCGGTCGCGCCCGATGA 40903 Query 153002 CGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTAC 153061 | | || || || || || || || || || |||||||| || |||| | ||||| | Sbjct 40904 CCGTGAGCCCCGCCATGGCGAGCGCCTTGGCGGAGTCACCTTCCGTGAGCACCAGCGTGC 40963 Query 153062 AGTCGTGAGACCGATGAG--TACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCCGT 153119 | ||| ||| ||| | | ||||| ||| ||||| || ||||| | ||| ||||| Sbjct 40964 ACTCG-GAG-GCGAAGCGCCCGCCGGCGAGGTTCGCGTCCTCGAGCTTCGCGATGCCCGT 41021 Query 153120 GATCCTGCTTTTCTTAGAGCCGTCGGTTTTCTTCAGTTCCTTG 153162 ||| | || | ||| ||||||| | ||||||||||||||| Sbjct 41022 GATGCGGCCTGCCTTCTTGCCGTCGTTCTTCTTCAGTTCCTTG 41064 Score = 111 bits (122), Expect = 2e-19 Identities = 264/393 (67%), Gaps = 12/393 (3%) Strand=Plus/Plus Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072 || |||||||| || || ||||| | ||| || ||||||||||| | | ||||||| Sbjct 40681 AGGCCCTTGATGTGCGAGCCGTCGTGGTCCTGGTCCGTCATGATCATGATGTGGCCGTAG 40740 Query 118073 CGTAAATCTCTCAG-GGAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAG 118131 || | | |||| | | | | || || || || || || || |||||||||| || || Sbjct 40741 CGCAGA-CTCTTGGTGTCGGTGTACACTTTGCCCTGCTGCAGACCGAGGATCTGCTTCAG 40799 Query 118132 GTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGG 118191 |||| | || | || ||| | | ||| || | ||||| || |||||| || Sbjct 40800 CATGGAGATCTCGGCGTTCTCCATGATCTGCTTGTGCGCCGCGTCGCGCACGTTGAGCAC 40859 Query 118192 CTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAAT 118251 ||| || ||||| || |||||||| | ||| || || | || | | || || || Sbjct 40860 CTTGCCGCGCAGCGGGAACACGCCGTAGCGGTCGCGCCCGATGACCGTGAGCCCCGCCAT 40919 Query 118252 AGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGATG 118311 || || ||||| || |||||||| || || | | || |||||||||| | |||| | Sbjct 40920 GGCGAGCGCCTTGGCGGAGTCACCTTCCGTGAGCACCAGCGTGCACTCGGAG--GCGAAG 40977 Query 118312 AG--TACCGGCCCAATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCG---CGACTTT 118366 | ||||| || || || || ||||||| | |||||| ||||| | ||| Sbjct 40978 CGCCCGCCGGCGAGGTTCGCGTCCTCGAGCTTCGCGATGCCCGTGATGCGGCCTGCCTTC 41037 Query 118367 TTGGACCCATCTGTCTTCTTGAGCTCTTTGTCG 118399 ||| || || ||||||| || || |||||| Sbjct 41038 TTG---CCGTCGTTCTTCTTCAGTTCCTTGTCG 41067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 174/248 (70%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 117350 CGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTT 117409 ||||||||||| || || |||||| || | ||| | |||||| | ||| || |||| Sbjct 39982 CGCGTACCGAACTGACCGCTCGGCCACAGAAAGTTGATGTTGTTCGAGCCGACGTAGTTC 40041 Query 117410 TGAGCCAAGTTGACAATCGTACCTTGGAG-GCTCG-CCTCACCATGGTGATACGCCGTCT 117467 || |||| ||| || || || || |||| || | | || || ||||| || |||| | Sbjct 40042 TGCGCCAGGTTCACGATGGTGCC--GGAGAGCGAGACTTCGCCGTGGTGGTAGGCCGAGT 40099 Query 117468 GCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTT 117525 ||| || |||||||| ||||| || ||||| || || | ||| ||||| ||| Sbjct 40100 TCTCGGCAACGTAGCCGCTGAGCTGCGCGACCTTGATCTCGTTAACG--AGGTTGCGCTT 40157 Query 117526 GAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGAT 117585 || ||| || | | |||||||||||||| ||||| || || || | | | ||||| Sbjct 40158 GAAGCACGCGAAGAGCACCTTGCGCTGACCGGGCTTGAGGCCGTCGACGAGGGATGGGAT 40217 Query 117586 CGAACGCT 117593 || |||| Sbjct 40218 CGCGCGCT 40225 >seq47 Length=109138 Score = 93.3 bits (102), Expect = 5e-14 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 118169 GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGG 118228 || ||||| || ||||| || |||| || |||| || || ||||| ||||| || ||| Sbjct 40630 GTCGCGTCGCGCACGTTAAGCAGCTTGCCGCGCAAGGGGAAAACGCCGAACTTCTCGCGG 40689 Query 118229 CCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATA 118288 || || || | ||| | | || || |||||||| ||||||||||| || | || Sbjct 40690 CCGACGACAGCGAGGCCCGATAACGCCAGCGCCTTCGCGGAGTCACCCTCCGTGAGGATC 40749 Query 118289 AGAGTGCACTCGGTGC-TGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTTC 118342 || |||||||| |||| ||| | || |||||| | ||||| || || |||||| Sbjct 40750 AGCGTGCACTC-GTGCGAGCGCGGCGTGCCGGCCAAGTTAGCGTCGTCGAGCTTC 40803 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 152932 ACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTG 152991 || || || || || || || || |||| || || | || || ||||||||| | | Sbjct 40627 ACTGTCGCGTCGCGCACGTTAAGCAGCTTGCCGCGCAAGGGGAAAACGCCGAACTTCTCG 40686 Query 152992 CGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATA 153051 ||||| || || || || | | || || || ||||| ||||||||||| |||| Sbjct 40687 CGGCCGACGACAGCGAGGCCCGATAACGCCAGCGCCTTCGCGGAGTCACCCTCCGTGAGG 40746 Query 153052 ATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTT 153107 || ||||| || ||||| || || | || |||||| |||| |||||||| ||||| Sbjct 40747 ATCAGCGTGCACTCGTGCGAGCGCGGCGTGCCGGCCAAGTTAGCGTCGTCGAGCTT 40802 >seq53 Length=108086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/230 (68%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 74820 CCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACA 74879 || |||||||| | ||| |||||||| |||||||| || |||||||||||| ||||| Sbjct 12907 CCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACG 12848 Query 74880 CACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGG---AAGTCATCCAAGTCTGA 74936 || || ||| |||| ||||| | ||||||| ||| || | ||||| | | Sbjct 12847 CAGGCGAAGCCGACGAGGCGCTCGGCGAACGACGCAGTGGGGTTGTTGATCCACTTGAGG 12788 Query 74937 GCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCC 74996 ||||| | || || ||||| ||| || || ||||| || | ||||| | | | Sbjct 12787 GCCCAGGCCGCCTTGGTGCGGACCGAAGGCACGGTCTCGATGGCGTTAAAGAGACGGGTC 12728 Query 74997 TTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTC 75046 ||||| | | || ||| | |||| |||| || ||||| ||||| Sbjct 12727 TTCTCGACCTGGTCGGTGATGTAGGTGTCGATCAGGAGCGAGTAGGTCTC 12678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211116097200