Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq30 322 5e-83 seq311 134 2e-26 seq3 118 1e-21 seq47 111 2e-19 seq651 93.3 5e-14 seq681 87.8 2e-12 >seq30 Length=128594 Score = 322 bits (356), Expect = 5e-83 Identities = 946/1437 (66%), Gaps = 52/1437 (4%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 || ||||| || || |||||||||||||||||||||||||||||||| |||| | |||| Sbjct 2417 GCGCGCGTGCGGAGGTAGTACATGCCCGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGC 2476 Query 80092 ATAGAACTGAGCTTCGCA-AGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150 || || | ||||| || ||| || ||| |||| || ||| | ||||| ||||| Sbjct 2477 ATCGAGGTCAGCTTGGCGTAGT-TGACGTTGGGCATGTGGACGTTGAACGACTGCGACTG 2535 Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210 |||| | || || || || || ||||| | || | | ||| || ||||| Sbjct 2536 GTCGATGTACGCGCCGCGGTCGGCGGCCATGTTGATGAGCGTCTTGCCCTTCATCTCCCA 2595 Query 80211 TACTGTACGATACACCTTACGAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTGCC 80267 || || || | || || | ||||| || || || ||| |||||| ||| Sbjct 2596 CACCGTCTTGTAGATCTCGCGCAAGTCCTCGGGGATCTCGGTCAGCCCCTGCACAGAGCC 2655 Query 80268 ACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAG----ACA---CCAAGCTTGT 80320 || || | || | || ||| || || |||| | ||| || || | Sbjct 2656 ---GTTGTTGGCGATGAGCTTGTTC--TTGAG-CGTCTGGTTCCACAGTCCCTGGCGGAT 2709 Query 80321 GCAGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCA 80380 | || || || |||||| ||| | || ||||| || || || ||||| |||| Sbjct 2710 G-AGGTCGCGCAGCAGGTGCGAGTTGACGCACACGAACTCGCCGGCCAGCGTGCGCCGCA 2768 Query 80381 GATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGC 80440 || ||||| | ||||| | ||| || | ||||||||| || |||||||| | ||||| Sbjct 2769 CGTAGAGGTTCGACGTGTAGGCCTCGAACGACTCGTTGTTGCCCAGGATCTGCGACGTGC 2828 Query 80441 TCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCT 80500 | ||||| ||||| || | || | || || || ||||| ||| |||||| || Sbjct 2829 TGGCCGTGGGCATGGGCGCCACAAGAAGCGAGTTGCGCAGCCCGACGCGCTTGATGCGCT 2888 Query 80501 C-----GCGCAAATCTGACCAAAAATCAACCC--CAACGCTGTGACC-----CCACATGT 80548 | |||| | | || | | ||| | ||| | || |||||||| Sbjct 2889 CCTTGAGCGCGGCCCAGTCCCAGCGCCCGCCCACCGTCGCGGGCTCCACGCCCCACATGT 2948 Query 80549 CGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCG 80608 || ||||| ||| ||| ||||| || |||| ||| | |||||||| ||| || Sbjct 2949 CGAACTGCAGCTCGCCGCGCGAGGCCGGCGAGCCCGGGAAGGACTCGTACGCGCCGTCGC 3008 Query 80609 TCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCT 80668 || ||||| || |||||| || | || || ||| || ||| | |||||| | | Sbjct 3009 GCTCGGCCATGTCGCACGACGCCGTCAGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGC 3068 Query 80669 TGTTCACACCGCGCGCCT-GTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCA 80727 ||||| | |||||| | || | ||| ||| || | ||| | |||| | |||| Sbjct 3069 GGTTCAGCGCCTGCGCCTCCTCGGAC-TCGTACGGCAGCCGCATAAGGATGAGCGCGTCG 3127 Query 80728 GCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTC 80786 ||||||||||| || |||| |||| |||||||||||| |||| | ||| || ||||| Sbjct 3128 GCCAGGCCCTGGACACCGAGCCCGATGGGGCGGTGGCGCATGTT-GCTCGTGCGCGCCTC 3186 Query 80787 CGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGT 80846 | | ||||| | ||| | |||||||||||||| |||||||| || | || | || Sbjct 3187 CTTGACCGGGTACAGGTTGATGTCGATGACGCGGTTGAGGTTGCGCGTGGCGACTTGCGT 3246 Query 80847 AACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC--------ACAAATGCCGGA 80898 || ||| || ||| |||||| | ||| ||| | | || || || | Sbjct 3247 CACCTCAAACAGGCGCTGGAAGTCG--TAGGTGCCCGTGCGTTCGTCGACGAA-GCGGTT 3303 Query 80899 AGGCTC-AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGAT 80957 || | | || || || ||||||||||||||||| || | || |||||||||| Sbjct 3304 GAGCGCGATCGAGGCGAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACTCGACGAT 3363 Query 80958 TTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTT 81017 |||||||||| || || | || || |||||||| | |||||| |||||| ||| Sbjct 3364 CTCCGTGCACAGGTTCGAGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTT 3423 Query 81018 GCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGC 81077 ||| |||||||||||| ||||| || || || ||||| ||| | | ||| | ||| Sbjct 3424 GCACGCGTCCTTGTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCACGGC 3483 Query 81078 GTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 ||| | | |||||||||||| | || || ||| | | | | |||| | Sbjct 3484 CGTCCACAGCGCGCGCGCCTTGATCGTCTGCCGCGCGCGGCCCTGGTTCTCGTACTGCGT 3543 Query 81138 GTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGC 81196 ||| ||| | ||||| | ||| || || | || | || ||||| |||| Sbjct 3544 GTACAGCCGC-TCGAAGTCGGCGCCCCACGAGTCGGCCAGCCCCGGCGCCTCGTGCGGGC 3602 Query 81197 ACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGA 81256 | | || |||| || ||||| || || |||||| ||| | ||||| Sbjct 3603 AAAAGAGCGACCAGAGCTCGTTCTTCTCCACGCGCTCCATGAAGAGGTCGCACACCCAGA 3662 Query 81257 GGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGA 81316 || || ||| |||||||| |||||||||||| || ||||| ||||| || | Sbjct 3663 GGCCGTAGAAAAGGTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGTTCTTGCGCAGGTCCA 3722 Query 81317 GAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGAC 81376 | ||| ||||||||| || ||||| |||||||| || ||||||| | |||||||| | Sbjct 3723 GGAAGGACATGATGTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGC 3782 Query 81377 GG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGA 81430 || |||||||||| |||||| || || || ||| || || |||| ||| |||| Sbjct 3783 GGCCTCCACCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGA 3839 >seq311 Length=46126 Score = 134 bits (148), Expect = 2e-26 Identities = 271/396 (68%), Gaps = 12/396 (3%) Strand=Plus/Minus Query 31149 GGTCGAGAAGGAGCTCAAGAAAACAGATGGGTCCAAAAAGTCT---CGAATTACGGGAAT 31205 || ||| ||||| || ||||| | || || ||| ||| | || || ||||| || Sbjct 41070 GGCCGACAAGGAACTGAAGAAGAACGACGG---CAAGAAGGCAGGCCGCATCACGGGCAT 41014 Query 31206 TCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCA--CGAGTGCACGCTT 31263 |||||||||| ||||| ||| ||||| | | |||| |||||||||||| Sbjct 41013 CGCGAAGCTCGAGGACGCGAACCTCGCCGGCGGGCGCT--TCGCCTCCGAGTGCACGCTG 40956 Query 31264 ATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGG 31323 | | || || |||||||| || |||||||| || || || || | | || | ||| Sbjct 40955 GTGCTCACGGAAGGTGACTCCGCCAAGGCGCTCGCCATGGCGGGGCTCACGGTCATCGGG 40896 Query 31324 CGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCC 31383 ||| | | ||| ||||| ||||| || |||||| || ||||| || ||||| | Sbjct 40895 CGCGACCGCTACGGCGTGTTCCCGCTGCGCGGCAAGGTGCTCAACGTGCGCGACGCGGCG 40836 Query 31384 GTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAG 31443 || ||| | | ||| || | ||| | |||| ||||| |||||||||| || ||| Sbjct 40835 CACAAGCAGATCATGGAGAACGCCGAGATCTCCATGCTGAAGCAGATCCTCGGTCTGCAG 40776 Query 31444 CATGGCAAGGTATATA-ATTCACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGAC 31502 || ||||| || || | ||| |||| |||| ||||| | | ||||||| ||||| Sbjct 40775 CAGGGCAAAGTGTACACCGACACCAAGAG-TCTGCGCTACGGCCACATCATGATCATGAC 40717 Query 31503 CGACGCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538 ||| || | ||||||| ||||||||||| || Sbjct 40716 GGACCAGGACCACGACGGCTCGCACATCAAGGGCCT 40681 Score = 131 bits (144), Expect = 2e-25 Identities = 247/359 (69%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 |||||||||||||| |||||||||||| | | ||| ||| ||||| ||||| Sbjct 40202 GACGGCCTCAAGCCCGGTCAGCGCAAGGTGCTCTTCGCGTGCTTCAAGCGCAACCTCGTT 40143 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | || || ||||| |||||||| |||||||| || ||| | ||||||| |||||| Sbjct 40142 AACGAGATCAAGGTCGCGCAGCTCAGCGGCTACGTTGCCGAGAACTCGGCCTACCACCAC 40083 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 ||||| | |||||| |||||||| || ||||| || ||||||| ||||| | || Sbjct 40082 GGCGAAGTCTCGCTCTCCGGCACCATCGTGAACCTGGCGCAGAACTACGTCGGCTCGAAC 40023 Query 32164 AACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGC-CGGTGGCAAGGA 32222 ||| | ||||| || ||| || ||||| || || | || ||| || ||| || Sbjct 40022 AACATCAACTTTCTGTGGCCGAGCGGTCAGTTCGGTACGC-GCGCGCAGGGCGGCCGCGA 39964 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAG--ATTTTC 32280 | ||| | |||||||||||||| |||| | || ||||||| | || || Sbjct 39963 CTCCGCGTCGCCGCGTTACATCTTCACTTATCTCTCCCCCATTACGCGCACGGTCTTCTC 39904 Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCC 32339 | || | ||||| ||| | || || ||| || ||||| ||| | ||||||| Sbjct 39903 GGCCAG--CGACGACGCGATCCTGAACTACCTCAACGACGACGGGCAGTCGATCGAGCC 39847 >seq3 Length=187283 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || | |||||||||||| ||||| || || Sbjct 12305 ATGCAGATTTTCGTCAAGACCCTCGCTAACAAGACTATTACGCTTGATGTCGACCATTCC 12364 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | | | ||| || || |||||||||||||| ||||| || |||||| Sbjct 12365 GACACGATCGAGACCGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 12424 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || ||||| ||||| || | || ||||| || ||||| || Sbjct 12425 CAGCGCCTCATCTTCCAGGGCAAGCAGCTCGACGACGGCCGCACCCTTGCCGACTACAAC 12484 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 ||||| || || ||||| ||||| || || | ||| | ||||||||||| Sbjct 12485 GTCCAGAAAGAGTCCACGCTTCACCTCGTACTTCGTTTGCGCGGTGGACA 12534 >seq47 Length=109138 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 31209 GAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTAT 31268 ||||||||||||||| |||| |||||| || | ||||||||||||||||| || | Sbjct 40803 GAAGCTCGACGACGCTAACTTGGCCGGCACGCCGCGCTCGCACGAGTGCACGCTGATCCT 40744 Query 31269 TACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAA 31328 || ||||||||||| || |||||||| || | | ||| | ||| || || ||| | Sbjct 40743 CACGGAGGGTGACTCCGCGAAGGCGCTGGCGTTATCGGGCCTCGCTGTCGTCGGCCGCGA 40684 Query 31329 TGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGC 31379 |||||| || || || | || ||||||| || |||||| || ||||| Sbjct 40683 GAAGTTCGGCGTTTTCCCCTTGCGCGGCAAGCTGCTTAACGTGCGCGACGC 40633 Score = 86.0 bits (94), Expect = 7e-12 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 32003 AGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGC 32062 |||||||| | | ||||| ||| ||||| |||||| | || || ||||| || | Sbjct 39524 AGCGCAAGATCCTGTACGCGTGCTTCAAGCGCAACCTGACCCAGGAGATCAAGGTCGCCC 39465 Query 32063 AGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGG 32122 | ||| | || ||||| || || || || | ||| |||||||||||| ||||||| | Sbjct 39464 AACTGGCCGGTTACGTCGCTGAACATACCGGCTACCACCACGGCGAGCAGTCGCTCAACT 39405 Query 32123 GCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGC 32182 |||||||||||| | || ||| | || || | || || || | | | || Sbjct 39404 CGACCATTGTCAACATGGCGCAGGATTTCGTGTTTAGCAACAATCTCCCGCTGTTGGCGC 39345 Query 32183 CATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACA 32242 | ||| ||||| || || |||| ||||| ||||| ||||| | ||||| | Sbjct 39344 CGATTGGCCAGTTCGGCACGCGGCATATGGGTGGTAAGGACGCTGCCTCGCCGCGTTATA 39285 Query 32243 TCTTCAC 32249 ||||||| Sbjct 39284 TCTTCAC 39278 >seq651 Length=6762 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| ||| ||||||| || || || || ||| Sbjct 606 AAGATTCAGGACAAGGAGGGCATTCCCGTGGACGAGCAGCGCCTTATCTTCCAGGGCAAG 665 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || ||||||||||| || || || || ||||| || || ||||| | ||| | ||| | Sbjct 666 CAGCTCGAGGATGACCGCACTCTTGCCGACTACAACGTTCAAAATGGATCTAATCTGAAC 725 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGACA 27635 || ||| | || || || ||||| || Sbjct 726 CTTGTCCTCCGCCTGCGTGGTGGGCA 751 >seq681 Length=11217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT-GATAG 27470 || || || ||||| ||| || |||||| || || |||| ||||| ||| || | Sbjct 3012 ATTTTCGTTAAGACTCTTGCCAACAAGACGATCACCCTTGTTGTTGA-TCACTCCGACAC 3070 Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| | | | ||| || || |||||| |||||| ||||| || ||||||||||| Sbjct 3071 CATTGAGACTGTTAAGTAGAAGATCCAGGACGCGGAGGGCATTCCCCCGGACCAGCAGCG 3130 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 || || || || ||||| ||||| |||| || || || || ||||| | || | Sbjct 3131 CCTTATCTTCCAGGGCAAGCAGCTCGATGATGGCCGCACTCTTGCCGACTACAGCGTTCG 3190 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTA 27641 ||| ||| ||||| ||| | || | || || || ||| |||||||| Sbjct 3191 AAAAGAAGATACTCTGCATTTTATCCTCCGCCTGCGTGGT--TCAAGTTTA 3239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305309979680