Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq429 168 5e-37 >seq429 Length=23534 Score = 168 bits (186), Expect = 5e-37 Identities = 324/475 (68%), Gaps = 2/475 (0%) Strand=Plus/Minus Query 29875 CAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCC 29934 |||||| |||||| | | ||| ||||| ||||| || | | ||| || | || || Sbjct 6571 CAGCGGCCCCACGTGGTTCGAGTACACGTGCGCGTCGCCGATGCAGTGCACCAGGTCGCC 6512 Query 29935 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29994 || | |||||| |||||| |||| |||| || || | |||| |||||||| Sbjct 6511 AGGCCGCAAATTCGTGACGCGAGCCAGCATGCACGTCAGCAGCGCGTAGGACGCGATGTT 6452 Query 29995 AAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC 30054 ||||| || || |||||||| || | | |||||||||| | ||||||||||| || Sbjct 6451 GAAGGGCACGCCCAGCCCCATATCGGCGCTGCGCTGGTAGAGCAGGCACGAGAGCTCGCC 6392 Query 30055 GTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30114 ||| ||||| ||||| | | |||||||||| || || ||||| ||||| ||| Sbjct 6391 GTCCGAGACGTAGAACTGCGAGAGCACGTGGCACGGTGGCAGCGCCATCTTGCCCAGGTC 6332 Query 30115 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 30174 |||||||| || ||| ||||||||||| || ||||| | | | | | Sbjct 6331 CGCCGGGTTCCACGCCGACATGATGATGCGCCGCGAGTCGGGGTTCTGGCGCAGGGTGCG 6272 Query 30175 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30234 ||| ||| |||||| ||||| ||| | |||| |||||| || ||| |||| Sbjct 6271 CACAACGTCGGCCAGCTGGTCCACGCCCTTGCCCGTGTAGTCGGCGTGGCAGTCGATGTA 6212 Query 30235 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30294 || ||||| |||| ||||||||| ||||| || || |||||||| | | | | Sbjct 6211 AGGCGCACCGAAGTGCCGCCACTGGAAGCCGTATACAGGACCCAGGTCCTGCGCCGCGCG 6152 Query 30295 G-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30348 | |||| ||| || ||||| || || | ||| |||||| |||||||||| Sbjct 6151 GCCGCTC-TGGCCAATCGAGTCCAGGAACTCGCGGGAGCCGTTGCCGTCCCAGAT 6098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306864337688