Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq429 154 1e-32 >seq429 Length=23534 Score = 154 bits (170), Expect = 1e-32 Identities = 375/562 (67%), Gaps = 12/562 (2%) Strand=Plus/Plus Query 34397 GACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGC 34456 ||| |||| || || ||||| ||||||||| | ||||| || ||| || | || Sbjct 6164 GACCTGGGTCCTGTATACGGCTTCCAGTGGCGGCACTTCGGTGCGCCTTACATCGACTGC 6223 Query 34457 GAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAG 34516 | || ||||| |||| |||| | |||||||||| |||| | |||| || Sbjct 6224 CACGCCGACTACACGGGCAAGGGCGTGGACCAGCTGGCCGACGTTGTGCGCACCCTGCGC 6283 Query 34517 CGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTG 34576 | |||||| || | | ||| | |||| |||||||||||| ||| || | Sbjct 6284 CAGAACCCCGACTCGCGGCGCATCATCATGTCGGCGTGGAACCCGGCGGACCTGGGCAAG 6343 Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 |||||||| || ||||||||| |||| || ||||||||| || | || ||||| || Sbjct 6344 ATGGCGCTGCCACCGTGCCACGTGCTCTCGCAGTTCTACGTCTCGGACGGCGAGCTCTCG 6403 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 |||| |||||| || || | || |||||| | || ||||| |||||||| || Sbjct 6404 TGCCTGCTCTACCAGCGCAGCGCCGATATGGGGCTGGGCGTGCCCTTCAACATCGCGTCC 6463 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756 ||||| ||||| |||| |||| | |||| ||| | ||| ||||| || |||||| Sbjct 6464 TACGCGCTGCTGACGTGCATGCTGGCTCGCGTCACGAATTTGCGGCCTGGCGACCTGGTG 6523 Query 34757 CATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCT-CCGGATCCAGCT 34815 || | || || ||||| | ||| ||||||| | | || ||| | || ||||| Sbjct 6524 CACTGCATCGGCGACGCGCACGTGTACTCGAACCACGTGGGGCCGCTGGCCGA-GCAGCT 6582 Query 34816 GCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT-TATTCGAGCCGTCACCTCA---- 34870 || || | ||| || | |||||| |||||| || | || || || ||| Sbjct 6583 GCGCCGCGTGCCGCGCGCCTTCCCCACGCTCAAGATCTCGCCGCGCGAGGACATCAAGGA 6642 Query 34871 -ATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGCCC- 34928 ||||| ||||| | ||||||||||| | | || || ||| | | |||||| | Sbjct 6643 GATCGACGACTTCCGCTCCGAGGACTTCGAGATCGAGGGCTAC--AACCCCCTCGGCGCG 6700 Query 34929 -TGAAGATGGAGTTGGCGGTGT 34949 | ||||| || |||| |||| Sbjct 6701 ATTCAGATGAAGATGGCCGTGT 6722 Score = 154 bits (170), Expect = 1e-32 Identities = 375/562 (67%), Gaps = 12/562 (2%) Strand=Plus/Minus Query 6396 ACACCGCCAACTCCATCTTCA--GGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTC 6453 |||| |||| || ||||| | | |||||| | | ||| || || | | ||||||| Sbjct 6722 ACACGGCCATCTTCATCTGAATCGCGCCGAGGGGGTT--GTAGCCCTCGATCTCGAAGTC 6665 Query 6454 CTCGCTCCTAAAGTCATCGAT-----TGAGGTGACGGCTCGAATA-ATTTTGAGCTGGGG 6507 |||| | ||||| ||||| ||| || || || | || |||||| ||| Sbjct 6664 CTCGGAGCGGAAGTCGTCGATCTCCTTGATGTCCTCGCGCGGCGAGATCTTGAGCGTGGG 6605 Query 6508 GAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGG-AGCCGCTCGATGTGGTTCAGGTAGA 6566 ||| | || ||| | || ||||||| || | ||| || | | ||||||| ||| | Sbjct 6604 GAAGGCGCGCGGCACGCGGCGCAGCTGC-TCGGCCAGCGGCCCCACGTGGTTCGAGTACA 6546 Query 6567 TATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGA 6626 ||||| || || | |||||||| || ||||| ||| | ||| |||| | Sbjct 6545 CGTGCGCGTCGCCGATGCAGTGCACCAGGTCGCCAGGCCGCAAATTCGTGACGCGAGCCA 6486 Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 |||| |||| ||||| ||||| || |||||||| ||||| || | |||||| || Sbjct 6485 GCATGCACGTCAGCAGCGCGTAGGACGCGATGTTGAAGGGCACGCCCAGCCCCATATCGG 6426 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGG 6746 | || || |||||| |||| || ||||| || | || ||||||||| || |||| Sbjct 6425 CGCTGCGCTGGTAGAGCAGGCACGAGAGCTCGCCGTCCGAGACGTAGAACTGCGAGAGCA 6366 Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 ||||||||| || ||||||||| || ||| |||||||||||| |||| | || Sbjct 6365 CGTGGCACGGTGGCAGCGCCATCTTGCCCAGGTCCGCCGGGTTCCACGCCGACATGATGA 6306 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866 | | | || |||||| | || |||| | |||| |||||||||| | | Sbjct 6305 TGCGCCGCGAGTCGGGGTTCTGGCGCAGGGTGCGCACAACGTCGGCCAGCTGGTCCACGC 6246 Query 6867 CCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGA 6926 ||| |||| ||||| || | || | || ||| || ||||| | |||||||| Sbjct 6245 CCTTGCCCGTGTAGTCGGCGTGGCAGTCGATGTAAGGCGCACCGAAGTGCCGCCACTGGA 6186 Query 6927 ACCCGTAGACCGGGCCCAAGTC 6948 | ||||| || || |||| ||| Sbjct 6185 AGCCGTATACAGGACCCAGGTC 6164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258399258080