Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 149 1e-30 seq182 129 1e-24 seq168 123 6e-23 seq681 109 1e-18 seq651 98.7 2e-15 >seq3 Length=187283 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| ||||||||||| |||| ||| || || |||||||| | || || Sbjct 12516 AGTACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGCAAGGGTGCGGCCGTCG 12457 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||| ||||| || ||||| || |||| || ||||||||| Sbjct 12456 TCGAGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 12397 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||| | ||||| ||||| || || || || || || || ||| Sbjct 12396 TGGATCTTCTGCTTGACGGTCTCGATCGTGTCGGAATGGTCGACATCAAGCGTAATAGTC 12337 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||| ||||| || || | |||||| Sbjct 12336 TTGTTAGCGAGGGTCTTGACGAAAATCTGCAT 12305 >seq182 Length=55624 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || ||||| ||||| | ||||| || ||||||||||| |||||| || || || ||| Sbjct 55623 TAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTGG 55564 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || || | || ||||||||||||||||| || || ||| | ||||||||||| ||| Sbjct 55563 TCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATGGTGTCCGAG 55504 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| ||||| || ||| ||||| || || | |||||| Sbjct 55503 TGGTCGACATCAAGAGTGATGGTCTTGTTCGCGAGGGTCTTCACGAAAATCTGCAT 55448 >seq168 Length=58069 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || ||||| ||||| | ||||| || ||||||||||| |||||| || || || ||| Sbjct 2 TAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTGG 61 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || || | || ||||||||||||||||| || |||||| | ||||| ||||| ||| Sbjct 62 TCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGGTCTCGATCGTGTCGGAG 121 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | ||| ||||| || || | |||||| Sbjct 122 TGGTCGACATCGAGGGTGATGGTCTTGTTGGCGAGCGTCTTCACGAAGATCTGCAT 177 >seq681 Length=11217 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||| || || ||||| |||||| | | | | || || ||||| || | ||||| Sbjct 3217 AGGATAAAATGCAGAGTATCTTCTTTTCGAACGCTGTAGTCGGCAAGAGTGCGGCCATCA 3158 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||||||| || ||||| || |||| || ||| |||| Sbjct 3157 TCGAGCTGCTTGCCCTGGAAGATAAGGCGCTGCTGGTCCGGGGGAATGCCCTCCGCGTCC 3098 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| | || || | || |||||||| ||| ||||| | || ||||||||| Sbjct 3097 TGGATCTTCTACTTAACAGTCTCAATGGTGTCGGAGTGATCAACAACAAGGGTGATCGTC 3038 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || | |||||||| || || Sbjct 3037 TTGTTGGCAAGAGTCTTAACGAA 3015 >seq651 Length=6762 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||| ||| | || | ||||| | ||| || || ||||| || | |||| Sbjct 733 AGGACAAGGTTCAGATTAGATCCATTTTGAACGTTGTAGTCGGCAAGAGTGCGGTCATCC 674 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||||||| || | ||| |||| || ||||||||| Sbjct 673 TCGAGCTGCTTGCCCTGGAAGATAAGGCGCTGCTCGTCCACGGGAATGCCCTCCTTGTCC 614 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || ||| | |||||| || || || || ||| |||||| Sbjct 613 TGAATCTTCTGTTTAACAGTTTTAACGGTGTCCAAGGAGTCGACGTCAAGAACCATCGTC 554 Query 211083 TT 211084 || Sbjct 553 TT 552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159141395932610