Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq681 109 1e-18 seq182 93.3 1e-13 >seq681 Length=11217 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||| || || ||||| ||||||| | || |||| ||||| | ||| | ||||| Sbjct 3217 AGGATAAAATGCAGAGTATCTTCTTTTCGAACGCTGTAGTCGGCAAGAGTGCGGCCATCA 3158 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||| || || ||||| || ||||| || ||| ||| Sbjct 3157 TCGAGCTGCTTGCCCTGGAAGATAAGGCGCTGCTGGTCCGGGGGAATGCCCTCCGCGTCC 3098 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| | ||| |||| || |||||||| ||| || || | | ||||||||| Sbjct 3097 TGGATCTTCTACTTAACAGTCTCAATGGTGTCGGAGTGATCAACAACAAGGGTGATCGTC 3038 Query 225682 TTG 225684 ||| Sbjct 3037 TTG 3035 >seq182 Length=55624 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| || |||||| || || || ||||| || || || || ||| Sbjct 55605 CCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCC 55546 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||||| || | ||||||||||| ||| || || || | ||| Sbjct 55545 TTGTCCTGGATCTTCTGCTTGACGGTCTCGATGGTGTCCGAGTGGTCGACATCAAGAGTG 55486 Query 225676 ATCGTCTTG 225684 || |||||| Sbjct 55485 ATGGTCTTG 55477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192520290575516