Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq429 143 2e-29 >seq429 Length=23534 Score = 143 bits (158), Expect = 2e-29 Identities = 316/477 (66%), Gaps = 6/477 (1%) Strand=Plus/Minus Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 |||||| ||||||||| ||| ||||| || || || | | ||| || | || || Sbjct 6571 CAGCGGCCCCACGTGGTTCGAGTACACGTGCGCGTCGCCGATGCAGTGCACCAGGTCGCC 6512 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || | |||||| |||||| |||| |||| || || | |||| |||||||| Sbjct 6511 AGGCCGCAAATTCGTGACGCGAGCCAGCATGCACGTCAGCAGCGCGTAGGACGCGATGTT 6452 Query 29767 AAAGGGCACCCCGAGCCCCATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCT 29824 |||||||| || |||||||| || | ||| | |||||||||| ||||||||||||| Sbjct 6451 GAAGGGCACGCCCAGCCCCATATCGGCGCTG--CGCTGGTAGAGCAGGCACGAGAGCTCG 6394 Query 29825 CCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 ||||| ||||| ||||| | | | |||||||| || || ||||| |||| | Sbjct 6393 CCGTCCGAGACGTAGAACTGCGAGAGCACGTGGCACGGTGGCAGCGCCATCTTGCCCAGG 6334 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 29944 || |||||||| || ||| ||||||||||| || ||||| | | | | | Sbjct 6333 TCCGCCGGGTTCCACGCCGACATGATGATGCGCCGCGAGTCGGGGTTCTGGCGCAGGGTG 6274 Query 29945 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNN 30004 ||| ||| |||||| ||||| ||| | |||| |||||| | Sbjct 6273 CGCACAACGTCGGCCAGCTGGTCCACGCCCTTGCCCGTGTAGTCGGCGTGGCAGTCGATG 6214 Query 30005 NNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30064 |||| |||| ||||||||| ||||| || || |||||||| | | | Sbjct 6213 TAAGGCGCACCGAAGTGCCGCCACTGGAAGCCGTATACAGGACCCAGGTCCTGCGCCGCG 6154 Query 30065 CTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30120 | | |||| ||| || ||||| || || | ||| |||||| |||||||||| Sbjct 6153 CGGCCGCTC-TGGCCAATCGAGTCCAGGAACTCGCGGGAGCCGTTGCCGTCCCAGAT 6098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406159665618604