Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq65 122 3e-23 >seq65 Length=99701 Score = 122 bits (134), Expect = 3e-23 Identities = 188/263 (71%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| || ||||| | ||||| | || ||||| ||| | Sbjct 98079 CCATGCACATGTGCGTGGCCTCGATAACCACGGCCACGCCTTCGGGCTCCAGCACCTCCA 98138 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACA 31124 | || | ||||||||| | || || || |||||||| ||||||||||| | |||| Sbjct 98139 TGATGGCATGCGCGATCTGCTTCGTCAGGCGCTCCTGCACCTGCAGGCGGCGCGAGTACA 98198 Query 31125 TGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGA 31184 | || | | ||| | | |||| |||||||| || ||| ||| ||||||| || Sbjct 98199 TCTCGACGATGCGAGCGAACTTGGACAGGCCCAGGACCTTGCCGCGCGGGATGTAGCCGA 98258 Query 31185 TCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGGAT 31242 | ||| ||| |||| | || |||| | | |||||||||||| ||| ||| ||| | ||| Sbjct 98259 T-GTGCACCTTGCCCATGAACGGCACCATGTGATGCTCGCACATG-GAGAAGAAGTTGAT 98316 Query 31243 GTCGCGCACCGTCACCATCTGGT 31265 |||||||| | ||||||| || Sbjct 98317 GTCGCGCAGCACGACCATCTCGT 98339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187288012018304