Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 111 4e-19 seq182 91.5 3e-13 >seq3 Length=187283 Score = 111 bits (122), Expect = 4e-19 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || |||||||| |||| |||||| ||||| | || | || || Sbjct 12516 AGTACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGCAAGGGTGCGGCCGTCG 12457 Query 151953 TCTAGGCT--TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || || || ||| | |||||| || | ||||||||||| | || || ||||| | Sbjct 12456 TCGAG-CTGCTTGCCCTG-GAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGT 12399 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || ||||| ||||| | |||| ||| || || ||||| ||||||| Sbjct 12398 CCTGGATCTTCTGCTTGACGGTCTCGATCGTGTCGGAATGGTCGACATCAAGCGTAATAG 12339 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||| | ||| ||||| ||||| | |||||| Sbjct 12338 TCTTGTTAGCGAGGGTCTTGACGAAAATCTGCAT 12305 >seq182 Length=55624 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 151970 GAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGAC 152029 |||||| || | ||||||||||| | ||| || ||||| || || || || || ||||| Sbjct 55582 GAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGAC 55523 Query 152030 AGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTT 152089 ||||| | | |||| || || || |||||||| || || ||| || ||| ||||| Sbjct 55522 GGTCTCGATGGTGTCCGAGTGGTCGACATCAAGAGTGATGGTCTTGTTCGCGAGGGTCTT 55463 Query 152090 CACGAAGACCTGCAT 152104 |||||| | |||||| Sbjct 55462 CACGAAAATCTGCAT 55448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153810244703094