Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 138 2e-27 seq182 116 8e-21 seq168 107 4e-18 seq311 104 5e-17 seq681 102 2e-16 seq651 98.7 2e-15 >seq3 Length=187283 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| |||||||| || || | |||| ||||| |||| ||||||||| ||| Sbjct 12531 CCACCGCGCAAACGAAGTACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGCA 12472 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| || || || || || || ||||| | || || ||||| ||| Sbjct 12471 AGGGTGCGGCCGTCGTCGAGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGGTCCGGGGGA 12412 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||||| ||||| ||||| ||| ||||| Sbjct 12411 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTGACGGTCTCGATCGTGTCGGAATGGTCGAC 12353 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| | | ||||| ||||| |||||||| Sbjct 12352 ATCAAGCGTAATAGTCTTGTTAGCGAGGGTCTTGACGAAAATCTGCAT 12305 >seq182 Length=55624 Score = 116 bits (128), Expect = 8e-21 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 282923 GTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTG 282982 |||||| || || ||||||||||| || || || || || ||||| | ||| || || Sbjct 55624 GTAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTG 55565 Query 282983 GTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCG 283041 ||| || || ||||||||||| |||||||| ||| || ||||| ||||| ||||||| Sbjct 55564 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TTGACGGTCTCGATGGTGTCCG 55506 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| || |||||||| ||||| || | ||||| ||||| |||||||| Sbjct 55505 AGTGGTCGACATCAAGAGTGATGGTCTTGTTCGCGAGGGTCTTCACGAAAATCTGCAT 55448 >seq168 Length=58069 Score = 107 bits (118), Expect = 4e-18 Identities = 132/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 282923 GTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTG 282982 |||||| || || ||||||||||| || || || || || ||||| | ||| || || Sbjct 1 GTAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTG 60 Query 282983 GTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCG 283041 ||| || || ||||||||||| |||||||| ||| || ||||| ||||| ||||| | Sbjct 61 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGGTCTCGATCGTGTCGG 119 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| ||||| ||||| | | ||||| ||||| |||||||| Sbjct 120 AGTGGTCGACATCGAGGGTGATGGTCTTGTTGGCGAGCGTCTTCACGAAGATCTGCAT 177 >seq311 Length=46126 Score = 104 bits (114), Expect = 5e-17 Identities = 307/467 (66%), Gaps = 6/467 (1%) Strand=Plus/Plus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||||||| | || | || | ||||| ||||||||||| ||||| || || | Sbjct 39754 GGGTTGTAGTTGGGGATGTCGGAGGACCAGCCGGTGCCAATGCCGGAGCTGCCGTTGATG 39813 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | | || | | || ||||| | |||||||| || | || ||||||| Sbjct 39814 AGCACCGTGGGCACCACGGGCACATACCACTCGGGCTCGATCGACTGCCCGTCGTCGTTG 39873 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGT 273776 ||||| |||| | || || || | | ||| ||| | ||||| || || Sbjct 39874 AGGTAGTTCAGGATCGCGTCGTCGCTGGCCGAGAAGACCGTGCGCGTAATGGGGGAGAGA 39933 Query 273777 TTCGTGAAAATGTACCT-GGC-ACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAA 273834 | ||||| ||||| | ||| || || | ||| ||| || ||| | || ||| | Sbjct 39934 TAAGTGAAGATGTAACGCGGCGACGCGGA--GTCGCGGCCGCCCTGCGCGCGCGTACCGA 39991 Query 273835 ACTGACC-CTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||||| ||||| || || |||| |||||||| |||||||| | ||| |||| Sbjct 39992 ACTGACCGCTCGGCCAC-AGAAAGTTGATGTTGTTCGAGCCGACGTAGTTCTGCGCCAGG 40050 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 |||||||| || || || || || ||||||||||| ||||| || ||||| | Sbjct 40051 TTCACGATGGTGCCGGAGAGCGAGACTTCGCCGTGGTGGTAGGCCGAGTTCTCGGCAACG 40110 Query 273954 TAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATAC 274013 || || |||| ||| || ||||| | ||| | | ||| |||||||| | | Sbjct 40111 TAGCCGCTGAGCTGCGCGACCTTGATCTCGTTAACGAGGTTGCGCTTGAAGCACGCGAAG 40170 Query 274014 AACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAAT 274060 | |||||| ||||| |||||||| || || |||| ||||| || Sbjct 40171 AGCACCTTGCGCTGACCGGGCTTGAGGCCGTCGACGAGGGATGGGAT 40217 >seq681 Length=11217 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 282875 ACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAG 282934 |||||||||||| || | | ||| | || ||||||| | | | ||||||| ||||| Sbjct 3230 ACCACGCAGGCGGAGGATAAAATGCAGAGTATCTTCTTTTCGAACGCTGTAGTCGGCAAG 3171 Query 282935 CGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAAT 282994 ||||||||||| || || || || || ||||| | || || ||||| ||||| Sbjct 3170 AGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATAAGGCGCTGCTGGTCCGGGGGAAT 3111 Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||| ||| |||||||| || || || || || ||||| || || || | Sbjct 3110 GCCCTCCGCGTCCTGGATCTTCTACTTAACAGTCTCAATGGTGTCGGAGTGATCAACAAC 3051 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCT 283095 || ||||||||||| | | |||||||||||| |||| Sbjct 3050 AAGGGTGATCGTCTTGTTGGCAAGAGTCTTAACGAAAATCT 3010 >seq651 Length=6762 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || || || | | | | | ||||| | ||||||||| ||| Sbjct 748 CCACCACGCAGGCGGAGGACAAGGTTCAGATTAGATCCATTTTGAACGTTGTAGTCGGCA 689 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||| ||||||| || || || || ||||| | || || | ||| | ||| Sbjct 688 AGAGTGCGGTCATCCTCGAGCTGCTTGCCCTGGAAGATAAGGCGCTGCTCGTCCACGGGA 629 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| ||| || || | | |||||| | | ||||| Sbjct 628 ATGCCCTCCTTGTCCTGAATCTTCTGTTTAACAGTTTTAACGGTGTCCAAGGAGTCGACG 569 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA-AGTCTTAACGAATATCTGCAT 283099 || ||| |||||||| |||| |||| || |||| || ||||| Sbjct 568 TCAAGAACCATCGTCTT-GTTTTCAAGAGTCCTAGCGAAAATTTGCAT 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046729624298956