Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq681 123 6e-23 seq182 123 6e-23 seq168 118 3e-21 seq651 98.7 2e-15 >seq3 Length=187283 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||| | || || || || || || || || || ||| Sbjct 12308 CAGATTTTCGTCAAGACCCTCGCTAACAAGACTATTACGCTTGATGTCGACCATTCCGAC 12367 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||| |||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 12368 ACGATCGAGACCGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 12427 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||| || || |||||||| || || | || |||||||| || |||||| Sbjct 12428 CGCCTCATCTTCCAGGGCAAGCAGCTCGACGACGGCCGCACCCTTGCCGACTACAACGTC 12487 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || || || Sbjct 12488 CAGAAAGAGTCCACGCTTCACCTCGT 12513 >seq681 Length=11217 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 |||||||| || ||||| | || ||||||||||| | || || ||| |||||| Sbjct 3012 ATTTTCGTTAAGACTCTTGCCAACAAGACGATCACCCTTGTTGTTGATCACTCCGACACC 3071 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || |||| || || | ||||| |||||| || || || || ||||||||||| || Sbjct 3072 ATTGAGACTGTTAAGTAGAAGATCCAGGACGCGGAGGGCATTCCCCCGGACCAGCAGCGC 3131 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 ||||||||| || || |||||||| ||||| | ||||||||||| || | ||| | | Sbjct 3132 CTTATCTTCCAGGGCAAGCAGCTCGATGATGGCCGCACTCTTGCCGACTACAGCGTTCGA 3191 Query 178107 AAAGAATCAACACTGCATCTT 178127 |||||| || |||||| || Sbjct 3192 AAAGAAGATACTCTGCATTTT 3212 >seq182 Length=55624 Score = 123 bits (136), Expect = 6e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||| | || || ||||| || || || || ||| ||| Sbjct 55451 CAGATTTTCGTGAAGACCCTCGCGAACAAGACCATCACTCTTGATGTCGACCACTCGGAC 55510 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||| |||||| || ||||| |||||||| || || ||||| ||||||||||| Sbjct 55511 ACCATCGAGACCGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 55570 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || || |||||| || || |||||||| ||||| | || || || || || Sbjct 55571 CGTCTCATCTTCCAGGGCAAGCAGCTCGATGATGGCCGCACCCTCGCGGACTA 55623 >seq168 Length=58069 Score = 118 bits (130), Expect = 3e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||| | || || ||||||||||| || || ||| ||| Sbjct 174 CAGATCTTCGTGAAGACGCTCGCCAACAAGACCATCACCCTCGATGTCGACCACTCCGAC 115 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||| ||| || || ||||| |||||||| || || ||||| ||||||||||| Sbjct 114 ACGATCGAGACCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 55 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || || |||||| || || |||||||| ||||| | || || || || || Sbjct 54 CGTCTCATCTTCCAGGGCAAGCAGCTCGATGATGGCCGCACCCTCGCGGACTA 2 >seq651 Length=6762 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 || ||||| |||||||||||||| || || || || |||| |||| || ||||||||| Sbjct 597 GTTAAACAGAAGATTCAGGACAAGGAGGGCATTCCCGTGGACGAGCAGCGCCTTATCTTC 656 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCA 178115 || || |||||||| |||| | ||||||||||| || ||||| ||||| | ||| Sbjct 657 CAGGGCAAGCAGCTCGAGGATGACCGCACTCTTGCCGACTACAACGTTCAAAATGGATCT 716 Query 178116 ACACTGCATCTTGT 178129 | ||| | ||||| Sbjct 717 AATCTGAACCTTGT 730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720188116516