Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq651 87.8 2e-12 seq168 87.8 2e-12 seq182 86.0 6e-12 seq449 82.4 7e-11 >seq3 Length=187283 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| | ||| | || || || |||||| ||| ||||| | ||| ||||||| Sbjct 12531 CCACCGCGCAAACGAAGTACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGCA 12472 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| ||||||||||||||||||| ||| || |||||||| ||||||| |||| Sbjct 12471 AGGGTGCGGCCGTCGTCGAGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGGTCCGGGGGA 12412 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | | | |||||| || || Sbjct 12411 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATCGTGTCGGAATGGTCGACA 12352 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || | || ||||| |||||||||||||| Sbjct 12351 TCAAGCGTAATAGTCTTGTTAGCGAGGGTCTTGACGAAAATCTGCAT 12305 >seq651 Length=6762 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 || |||| ||| ||||||| || ||||| || || |||||||||||||| ||| || Sbjct 709 TTTTGAACGTTGTAGTCGGCAAGAGTGCGGTCATCCTCGAGCTGCTTGCCCTGGAAGATA 650 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 |||||||| | |||| |||||| || |||||||||| Sbjct 649 AGGCGCTGCTCGTCCACGGGAATGCCCTCCTTGTCC 614 >seq168 Length=58069 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| | ||||||||| | || |||||||||||||| ||| || || ||||| ||| Sbjct 2 TAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTGG 61 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTC 41806 |||| ||| | || |||||||||| ||| || ||||||| | | | |||||| Sbjct 62 TCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGGTCTCGATCGTGTCGGAG 121 Query 41807 GACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || | || || || || | |||||||| ||||| |||||||| Sbjct 122 TGGTCGACATCGAGGGTGATGGTCTTGTTGGCGAGCGTCTTCACGAAGATCTGCAT 177 >seq182 Length=55624 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/179 (71%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| | ||||||||| | || |||||||||||||| ||| || || ||||| ||| Sbjct 55623 TAGTCCGCGAGGGTGCGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTGG 55564 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTC 41806 |||| ||| | || |||||||||| ||| || ||||| | | | | ||||| | Sbjct 55563 TCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATGGTGTC---C 55507 Query 41807 GA---CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || | || || || || || || ||||| |||||||||||||| Sbjct 55506 GAGTGGTCGACATCAAGAGTGATGGTCTTGTTCGCGAGGGTCTTCACGAAAATCTGCAT 55448 >seq449 Length=32475 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 85806 GCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATCGAC 85865 || || || ||||| || || | ||| || | |||||||| ||||| || |||||||| Sbjct 16978 GCGCCGCGCTCCGGGCTGGCGTGGAAGAACAGCATCGACGTCGGCGCGGGCGTCATCGAT 16919 Query 85866 GCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGAAGAGGATCTGGTC 85925 ||||||||||| |||||| | | | |||||||||| | |||| | || | | | Sbjct 16918 CAGGACTACCGCGGCAACGTCGGCGTGATCCTCTTCAACCTCAGCGACGTTGACTTCGCC 16859 Query 85926 GTGAGGCGA-GGAGACAAGGTGGCCCAGTTCATC 85958 ||| | ||| |||||| ||||| ||| ||||| Sbjct 16858 GTG-GCCGAGGGAGACCGCGTGGCGCAGCTCATC 16826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299873936800