Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq8 176 5e-39 >seq8 Length=1951132 Score = 176 bits (194), Expect = 5e-39 Identities = 490/743 (66%), Gaps = 9/743 (1%) Strand=Plus/Minus Query 16672 TCTT-TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATAT 16730 |||| ||||| ||||| ||||| || || ||||| || |||||||| | || || | Sbjct 1783999 TCTTCTGGTACTCGCTCACGCGGCGCTCAAAGAAGTTGGTCTTGCCCTCGATGGAAATGT 1783940 Query 16731 TCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGC 16788 ||||||| || || || || || || || | | || | | || || || | | Sbjct 1783939 TCTCCATAAAGGGGAAGGGGTTGGTGGCGTTGTAGACCTTGTCG--TAGCCGAGGCTGAC 1783882 Query 16789 GATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTAT 16848 || | | || | ||||| || || || | || ||| | | ||||||| || | Sbjct 1783881 GAGGAGGCGGTCGGAGACAAACTCAATGTACTCGCGCATGAGAGTGGAGTTCATGCCGAG 1783822 Query 16849 AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAAT 16908 || || || || || || |||||||| ||||| || | || || ||| | || Sbjct 1783821 GAGGGAGACGGGCAGCGCCTCGGTCAAAAACTCCTGCTCAATCTCGACGGCGTCCATGAT 1783762 Query 16909 AATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAG-ATGTTTAAACATCAGACATG 16967 || | | || || |||| || ||| | | | || ||| || ||| || || | Sbjct 1783761 GATGCCAATGACGCGCTCCTTGGGCGGCTTCTTGTGCAGCATGGAGAA-CATGAGGCAGG 1783703 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 | || ||||| || | |||||||| | |||||| || ||||| || |||| |||| Sbjct 1783702 CAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGACTGCGTCAGGCCGG 1783643 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| || || ||||| | ||| || || |||||||||||||| ||||| || | Sbjct 1783642 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGACCCGCTGAAGAAGATGC 1783583 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 ||||||| | ||||| |||| | || || || | | || |||| |||| Sbjct 1783582 CCTCGACAGCGGCAAAGGCGACGACGCGCTCCGCAAAGGAGGCCCGCTTGTGGTCGATCC 1783523 Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 | | |||||||||| || |||| | | || ||| || | ||| || || | Sbjct 1783522 AGCGCATGGCCCACTCGGCCTTGCGCTTGACGGCGGGCAGCGTCTCAACGGCGTTGAAGA 1783463 Query 17208 ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGG 17267 | | || ||||| ||||| | || ||||| |||||||| || |||||| || | Sbjct 1783462 GCATGTGCTTCTCCTGCGGGTCGTTGATGTACGTGTCGATGAGCAGCGAGTACATCTCAG 1783403 Query 17268 AGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAA 17327 |||| |||||||| || ||||| || ||||| ||||| || || || | | || | Sbjct 1783402 AGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGCCTCTGGCAGCTGCA 1783343 Query 17328 CTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 | || ||| | ||| || || | || || |||||||| ||||||||||| |||||||| Sbjct 1783342 CCTCGCACAT-GAAGCGCTCGACGAGGTTCTCGTTCACAATGCCGTCGCTGGCGGCGAAG 1783284 Query 17387 AACGCCAATATATGCTTAATGAA 17409 || || | | ||||| || || Sbjct 1783283 AAGGCGAGGACGTGCTTGATAAA 1783261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544603724720