Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8 450 1e-121 seq10 149 6e-31 seq2 109 6e-19 seq40 96.9 4e-15 >seq8 Length=1951132 Score = 450 bits (498), Expect = 1e-121 Identities = 629/869 (72%), Gaps = 16/869 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||||| |||||||| |||| || || || | ||||| || ||| | Sbjct 1783093 GAGCCCCTGCTGCGGGAGAACCCGAGCCGCTTTGTCATCCTGCCCATTCAGCACCGCCAG 1783152 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 ||||| ||||||||| ||||||| || || |||||||||| |||||||| |||||| Sbjct 1783153 GTGTGGTCCATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCGGAGGAGGTTGACCTG 1783212 Query 116696 TCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || ||| ||| | ||||| || | || |||| |||| || || |||||||| Sbjct 1783213 TCGCGCGACCTCGACC-ACTGGCGCGGCCTCAAGGACACGGAGCAGCACTTTATCAAGCA 1783271 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| || ||||| |||||||||||||||||||| || |||||||| || |||||||| || Sbjct 1783272 CGTCCTCGCCTTCTTCGCCGCCAGCGACGGCATTGTGAACGAGAACCTCGTCGAGCGCTT 1783331 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | ||||||||| || | |||||||| |||||||||||||| ||||| || || Sbjct 1783332 CATGTGCGAGGTGCAGCTGCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGATTGA 1783391 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 |||| | ||||| || ||||| ||| ||||||||||||||| | | || |||| Sbjct 1783392 GAACATCCACTCTGAGATGTACTCGCTGCTCATCGACACGTACATCAACGACCCGCAGGA 1783451 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 ||||| | | || |||||| | |||||| |||| |||||| ||||||||||| Sbjct 1783452 GAAGCACATGCTCTTCAACGCCGTTGAGACGCTGCCCGCCGTCAAGCGCAAGGCCGAGTG 1783511 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 ||| |||||||||||| | || |||| |||| | |||||| | || ||||| || Sbjct 1783512 GGCCATGCGCTGGATCGACCACAAGCGGGCCTCCTTTGCGGAGCGCGTCGTCGCCTTTGC 1783571 Query 117055 GGCCGTCGAGGGCGTCTTCTT-TTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 || ||||||||| ||||||| |||| | ||||||||||| || ||||||||||| | Sbjct 1783572 CGCTGTCGAGGGCATCTTCTTCAGCGGGTCG-TTCGCCGCCATCTTCTGGCTCAAGAAGC 1783630 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAG--CAACGAGCTCATCTCCAGGGACGAGGGTCT 117171 |||||||||||||||||||||| ||| ||||||||||||| | | |||||||| || Sbjct 1783631 GCGGCCTCATGCCCGGCCTGAC--GCAGTCCAACGAGCTCATCAGCCGCGACGAGGGCCT 1783688 Query 117172 GCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGC---AGCGACCGAGCGCGGC 117228 ||| |||||||||||||| | ||||| || || ||| || ||| | || Sbjct 1783689 GCACTGCGACTTTGCCTGCCTCATGTTC-TCCA--TGCTGCACAAGAAGCCGCCCAAGGA 1783745 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 |||||||| | ||| ||| ||||| |||| || |||||| || | ||||| || Sbjct 1783746 GCGCGTCATTGGCATCATCATGGACGCCGTCGAGATTGAGCAGGAGTTTTTGACCGAGGC 1783805 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGC-AATACATCGAGTTCG 117347 |||||| || || || || | || | | ||| ||| | ||||| ||||| | Sbjct 1783806 GCTGCCCGTCTCCCTCCTCGGCATGAACTCCACTCTCATG-CGCGAGTACATTGAGTTTG 1783864 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 || ||||| | || || || || | | || |||| ||||||| | ||||||| Sbjct 1783865 TCTCCGACCGCCTCCTCGTCAGCCTCGGCTACGACAAGGTCTACAACGCCACCAACCCCT 1783924 Query 117408 TGGACTTTATGAACCTCATCTCCTTGGAG 117436 | ||||||| | ||| ||| | ||| Sbjct 1783925 TCCCCTTTATGGAGAACATTTCCATCGAG 1783953 >seq10 Length=1852485 Score = 149 bits (164), Expect = 6e-31 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| |||||||| | || || || |||| | Sbjct 1590559 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGA-GCCATC 1590501 Query 40750 -GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | || |||| |||||| || || | ||||| ||||||||||| | |||| Sbjct 1590500 TGACTCGATTGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACC 1590442 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| || ||||| ||||| || |||| ||||| || | |||||||| Sbjct 1590441 AGCAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACA 1590382 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||||| || || ||| ||||| || | || ||| Sbjct 1590381 ACATCCAGAAGGAGAGCACGCTTCACCTTGTGCTGCGCCTGCGCGGTGGC 1590332 Score = 143 bits (158), Expect = 3e-29 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| |||||||| | || || || |||| | Sbjct 1590787 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGA-GCCATC 1590729 Query 40750 -GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | || |||| |||||| || || | ||||| ||||||||||| | |||| Sbjct 1590728 TGACTCGATTGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACC 1590670 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| || ||||| ||||| || |||| ||||| || | |||||||| Sbjct 1590669 AGCAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACA 1590610 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||||| || || ||| | ||| || | || ||| Sbjct 1590609 ACATCCAGAAGGAGAGCACGCTTCACCTTGTGCTTCGCCTGCGCGGTGGC 1590560 Score = 140 bits (154), Expect = 3e-28 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| |||||||| | || || || |||| | Sbjct 1591015 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTTGAGGTTGA-GCCATC 1590957 Query 40750 -GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | || |||| |||||| || || | ||||| ||||||||||| | |||| Sbjct 1590956 TGACTCGATTGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACC 1590898 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| || ||||| ||||| || |||| ||||| || | |||||||| Sbjct 1590897 AGCAGCGGCTTATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACA 1590838 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||||| || || ||| | ||| || | || ||| Sbjct 1590837 ACATCCAGAAGGAGAGCACGCTTCACCTTGTGCTTCGCCTGCGCGGTGGC 1590788 >seq2 Length=2479747 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| |||| ||||| || ||||||| ||| ||||| |||||||| |||| ||| Sbjct 86799 GGTATCCCCCCGGATCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 86858 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || | |||||||||||| ||||||||| ||| || || || ||| ||||| || | Sbjct 86859 ACGCTGAGCGACTACAACATTCAGAAGGAGAGCACCCTCCACCTTGTGCTGCGCCTGCGC 86918 Query 40912 GGCGG 40916 || || Sbjct 86919 GGTGG 86923 >seq40 Length=447072 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 22864 GGCGCGCTGGTCGACACCCTGGACCTGGTGGTGCTCGGCGCCTATTACGGCACGGGCCGC 22923 || ||||||| |||||| |||||||||||||| ||||||||||||||||||||| Sbjct 26604 GGAGCGCTGGCGGACACCGCCGACCTGGTGGTGCTGGGCGCCTATTACGGCACGGGCACA 26545 Query 22924 AACTGTCGCAAGATGTCAGTTTTTCTGATGGGCTGTCTGGACCGCGAG 22971 || | ||| ||||| || |||||||||||||| | |||| || || Sbjct 26544 AAGGGCGGCATCATGTCCGTGTTTCTGATGGGCTGCCAGGACAGCAAG 26497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218208203040