Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10 100 2e-16 seq2 93.3 4e-14 seq4 82.4 7e-11 >seq10 Length=1852485 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| ||||| ||||| ||||| || ||||| | Sbjct 1590368 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 1590427 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 |||||| |||||||| || || || |||||||||||||| || || || || | Sbjct 1590428 GATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 1590487 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | | ||| | ||| ||||| | || | || ||||| ||||| || || || Sbjct 1590488 CTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCAC 1590547 Query 118727 AAAAATCTGCATG 118739 ||| ||||||||| Sbjct 1590548 AAAGATCTGCATG 1590560 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| ||||| ||||| ||||| || ||||| | Sbjct 1590596 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 1590655 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 |||||| |||||||| || || || |||||||||||||| || || || || | Sbjct 1590656 GATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 1590715 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | | ||| | ||| ||||| | || | || ||||| ||||| || || || Sbjct 1590716 CTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCAC 1590775 Query 118727 AAAAATCTGCATG 118739 ||| ||||||||| Sbjct 1590776 AAAGATCTGCATG 1590788 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| ||||| ||||| ||||| || || || | Sbjct 1590824 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAA 1590883 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || |||||||| || || || |||||||||||||| || || || || | Sbjct 1590884 GATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 1590943 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | | ||| | ||| ||||| | || | || ||||| ||||| || || || Sbjct 1590944 CTCAATCGAGTCAGATGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 1591003 Query 118727 AAAAATCTGCATGG 118740 ||| |||||||||| Sbjct 1591004 AAAGATCTGCATGG 1591017 >seq2 Length=2479747 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||| | ||||| || ||| || ||||||||||| ||||| Sbjct 86924 ACCACCGCGCAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCT 86865 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| ||||| ||||| || |||||| ||||||||||||||||||| || || Sbjct 86864 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGGGG 86805 Query 118631 TATGCC 118636 || || Sbjct 86804 GATACC 86799 >seq4 Length=2372320 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 133220 CTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCT-GAGATATACATTCGACGTGA 133278 || ||| ||||| || |||||||| | ||| ||||| | ||| || | || |||| Sbjct 2279839 CTTGTTCACCACCTGGAACTCGCCAGAGAGCACGCGGCGCGAG-TAGATGTTGCTCGTGT 2279781 Query 133279 ACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACG 133338 | || || | || |||||||||||||| ||||| || || | ||| ||||||||| || Sbjct 2279780 AGGGCTCAATCGACTCGTTGTTGCCGAGAATCTGGGCAGTGGACGCGGTGGGCATGGGCG 2279721 Query 133339 CCACCAACAAAGAGTTTCTTACGCCGTACTTGTT 133372 | |||| || ||||| | | ||||| ||| || Sbjct 2279720 CAACCAGCAGCGAGTTGCGAATGCCGTCCTTCTT 2279687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829585754568