Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10 122 1e-22 seq25 86.0 7e-12 seq12 86.0 7e-12 >seq10 Length=1852485 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | || | ||||||||||| || || ||||| || ||| || || || Sbjct 1590345 CGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 1590404 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || ||||| ||||||||||| | ||| | || ||||||| Sbjct 1590405 TCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 1590464 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || |||| || | | || ||| | || || || | |||||| Sbjct 1590465 TCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATG 1590524 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| |||||||| ||||| Sbjct 1590525 GTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590559 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || ||| || || |||| || |||||||| ||| Sbjct 1590591 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCA 1590650 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || ||||| ||||||||||| | ||| | || |||||||||| ||| || ||| Sbjct 1590651 GCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 1590710 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | || | | || ||| | || || || | |||||||| ||||| || |||||| Sbjct 1590711 ACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTC 1590770 Query 43167 TTTACAAAGATTTGCAT 43183 || |||||||| ||||| Sbjct 1590771 TTCACAAAGATCTGCAT 1590787 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || ||| || || |||| || |||||||| || Sbjct 1590819 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCG 1590878 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || || ||||||||||| | ||| | || |||||||||| ||| || ||| Sbjct 1590879 GCAAAGATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 1590938 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | || | | || ||| | || || || | ||||||||| ||||| || |||||| Sbjct 1590939 ACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGCGTC 1590998 Query 43167 TTTACAAAGATTTGCAT 43183 || |||||||| ||||| Sbjct 1590999 TTCACAAAGATCTGCAT 1591015 >seq25 Length=983278 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 966732 CAGGGAATCGAACCCTGGTCTTCCGCGTGACAGGCGGAGATACTAGCCACTATACTA 966676 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 969628 CAGGGAATCGAACCCTGGTCTTCCGCGTGACAGGCGGAGATACTAGCCACTATACTA 969572 >seq12 Length=1669363 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 63310 CAGGGAATCGAACCCTGGTCTTCCGCGTGACAGGCGGAGATACTAGCCACTATACTA 63254 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 66198 CAGGGAATCGAACCCTGGTCTTCCGCGTGACAGGCGGAGATACTAGCCACTATACTA 66142 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 127950 CAGGGAATCGAACCCTGGTCTTCCGCGTGACAGGCGGAGATACTAGCCACTATACTA 128006 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 130813 CAGGGAATCGAACCCTGGTCTTCCGCGTGACAGGCGGAGATACTAGCCACTATACTA 130869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816499251120