Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq10 143 2e-29 seq2 100 2e-16 >seq10 Length=1852485 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||| ||||| | || || || ||||| |||||||||||| | Sbjct 1590333 CCACCGCGCAGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1590392 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| || | ||||||||| || || ||||||||||||||||| | |||| Sbjct 1590393 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGG 1590452 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | ||||| || | | || || Sbjct 1590453 -ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAAC 1590511 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||||||||| Sbjct 1590512 CTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590559 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||| ||||| | || || || ||||| |||||||||||| | Sbjct 1590561 CCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1590620 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| || | ||||||||| || || ||||||||||||||||| | |||| Sbjct 1590621 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGG 1590680 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | ||||| || | | || || Sbjct 1590681 -ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAAC 1590739 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||||||||| Sbjct 1590740 CTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590787 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||| ||||| | || || || ||||| |||||||||||| | Sbjct 1590789 CCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1590848 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| || | ||||||||| || || || |||||||||||||| | |||| Sbjct 1590849 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCGGG 1590908 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | ||||| || | | || || Sbjct 1590909 -ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAAC 1590967 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||| ||||| || || || ||||||||||||||||| Sbjct 1590968 CTCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1591015 >seq2 Length=2479747 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||| ||||| | || || || ||||| |||||||||||| | Sbjct 86923 CCACCGCGCAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 86864 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| ||| |||| |||| ||||||||| ||||| ||||| |||||||| || Sbjct 86863 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATC 86811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071393634240