Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 1e-11 >seq4 Length=2372320 Score = 86.0 bits (94), Expect = 1e-11 Identities = 197/293 (67%), Gaps = 8/293 (3%) Strand=Plus/Plus Query 249811 AACCTCAACAAGGTGATTGATGTCAATTTTTACCC---CCTTGAGGAATGCAGGTTGTCC 249867 |||||||||||| | || || |||| | ||||| || |||| ||| || || Sbjct 2279348 AACCTCAACAAGATTATCGACATCAACTACTACCCTGTCCCAGAGGCGCGCAAGT---CC 2279404 Query 249868 AACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACATGGTG 249927 |||||| ||||| || ||| | ||||| |||| || ||||| | || || Sbjct 2279405 AACATGCGCCACCGCCCCATTGGCATTGGCGTGCAGGGCCTTGCCGACGCGTTTATCCTG 2279464 Query 249928 ATGGGATTCCCCTTCGAGTCAGAGGAGGCA-GCGACGCTAAATAAACAGATTTTCGAGAC 249986 ||| | | ||||| || || |||||| |||| | || | ||||||||||||| Sbjct 2279465 ATGCGTCTTCCCTTTGACAGCGACGAGGCACGCGAGGTGAACCGCA-AGATTTTCGAGAC 2279523 Query 249987 CATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACGGACCATACGA 250046 |||||| ||||| | |||| || |||| || | || | || || |||||||| Sbjct 2279524 CATCTACCACGGCGCCCTCGAAGCCTCCACGGAGATTGCGTCCGTTGAGGGGCCATACGA 2279583 Query 250047 GAGTTTTCAGGGGTCGCCCGCGTCGTTCGGGAAGCTTCAGTTTGATCTTTGGG 250099 || |||| |||| |||||| | || || | ||||||||||| | |||| Sbjct 2279584 GACTTTTGAGGGCTCGCCCACCTCTGAGGGCATTCTTCAGTTTGACATGTGGG 2279636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764281324672